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GUIDEseq
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0
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replies
297
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
7 months ago
StayM
• 0
0
votes
6
replies
1.3k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.6 years ago by
Julie Zhu
★ 4.3k • written 2.6 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
765
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 2.8 years ago by
Julie Zhu
★ 4.3k • written 2.8 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
489
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
2.8 years ago
sharvari gujja
▴ 40
0
votes
0
replies
532
views
GUIDEseq: read count for each offtarget
GUIDEseq
2.8 years ago
sharvari gujja
▴ 40
0
votes
0
replies
635
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.8 years ago
sharvari gujja
▴ 40
3
votes
1
reply
842
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.0 years ago by
Julie Zhu
★ 4.3k • written 4.0 years ago by
David Kuo
• 0
0
votes
2
replies
1.1k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.0 years ago by
Julie Zhu
★ 4.3k • written 4.0 years ago by
Tiffany
• 0
0
votes
4
replies
1.2k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.1k
views
GUIDEseq BED input error
GUIDEseq
5.2 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.1k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
846
views
GUIDEseq outputDir error
GUIDEseq
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.2k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
803
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.2k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.3 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.7k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
aamir.mir
• 0
2
votes
1
reply
1.3k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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