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GUIDEseq
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0
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252
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
4 months ago
StayM
• 0
0
votes
6
replies
1.2k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.3 years ago by
Julie Zhu
★ 4.3k • written 2.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
722
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 2.5 years ago by
Julie Zhu
★ 4.3k • written 2.5 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
466
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
506
views
GUIDEseq: read count for each offtarget
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
606
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
3
votes
1
reply
789
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
David Kuo
• 0
0
votes
2
replies
1.0k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
Tiffany
• 0
0
votes
4
replies
1.2k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.0k
views
GUIDEseq BED input error
GUIDEseq
5.0 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.1k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
806
views
GUIDEseq outputDir error
GUIDEseq
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.2k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
759
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.2k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.1 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.7k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
aamir.mir
• 0
2
votes
1
reply
1.3k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units
by
elozanoe
• 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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