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GUIDEseq
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275
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
6 months ago
StayM
• 0
0
votes
6
replies
1.3k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.5 years ago by
Julie Zhu
★ 4.3k • written 2.5 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
746
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 2.7 years ago by
Julie Zhu
★ 4.3k • written 2.7 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
477
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
2.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
518
views
GUIDEseq: read count for each offtarget
GUIDEseq
2.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
623
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.7 years ago
sharvari gujja
▴ 40
3
votes
1
reply
818
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
David Kuo
• 0
0
votes
2
replies
1.1k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
Tiffany
• 0
0
votes
4
replies
1.2k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.1k
views
GUIDEseq BED input error
GUIDEseq
5.1 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.1k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
828
views
GUIDEseq outputDir error
GUIDEseq
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.2k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
779
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.2k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.2 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.7k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.4 years ago by
Julie Zhu
★ 4.3k • written 7.4 years ago by
aamir.mir
• 0
2
votes
1
reply
1.3k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.4 years ago by
Julie Zhu
★ 4.3k • written 7.4 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
James W. MacDonald
67k
How you analyze your data is up to you. But do note that Subset * Conditions implies that you want to find genes that respond to stimulus d…
Comment: MBDseq analysis using qsea package
by
kf
• 0
Hi Matthias, Happy new year! I wondered if it is possible to retrieve normalized value from each samples? makeTable seems only return beta…
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
Quang
• 0
Hi, James. I forgot to mention, but yes, I did run `DESeq2::DESeq()`. So, I ran `DESeq2::DESeqDataSetFromHTSeqCount`, then `DESeq2::DESeq()…
Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
ATpoint
★ 4.6k
It's an FAQ in the vignette: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-s…
Comment: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
67k
I am not sure I understand. You say that a unique Ensembl ID maps to multiple gene symbols. That doesn't mean you have two genes (it's just…
Votes
A: Trajectory analysis for single cell sequencing
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
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Dario Strbenac
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