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GUIDEseq
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0
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replies
336
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
9 months ago
StayM
• 0
0
votes
6
replies
1.4k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.8 years ago by
Julie Zhu
★ 4.3k • written 2.8 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
801
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.0 years ago by
Julie Zhu
★ 4.3k • written 3.0 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
518
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
0
votes
0
replies
566
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
0
votes
0
replies
667
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
3
votes
1
reply
883
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
David Kuo
• 0
0
votes
2
replies
1.2k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
Tiffany
• 0
0
votes
4
replies
1.3k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.1k
views
GUIDEseq BED input error
GUIDEseq
5.4 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.2k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
874
views
GUIDEseq outputDir error
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.3k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
842
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.3k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.5 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.8k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
aamir.mir
• 0
2
votes
1
reply
1.4k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
aamir.mir
• 0
17 results • Page
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Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
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