Bioconductor GTEx

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DESeq2 recount GTEx TCGA recount3

updated 19 months ago by ATpoint ★ 4.6k • written 19 months ago by David ▴ 20

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2.5k

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recount3 TCGA GTEx DESeq2

2.5 years ago David ▴ 20

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1.5k

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DESeq2 GTEx

3.8 years ago Bine ▴ 50

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3.7k

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recount gtex

updated 6.2 years ago by Leonardo Collado Torres ★ 1.1k • written 6.2 years ago by abe • 0

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1.3k

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limma voom gtex

6.7 years ago mico • 0

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rnaseq deseq2 gtex

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by vikram • 0

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4.3k

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public data TCGA GTEx Tutorial

7.4 years ago shepherl 4.1k

7 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Please come back to the support site and view your post - I've fixed it for you. If you want to show people your targets file, just paste t…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you Gordon! Apologies if this is a too basic question-I'm a biologist and want to ensure I understand correctly. Here is my metadata …

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

I offer my apologies if the title was misleading. I will change it at once. I wrote txdb because the error emnated from `seqlevelsStyle(txd…

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

Hi Herve As I mentioned, for parasites we rely on VEuPathDB databases (such as ToxoDB here: https://toxodb.org/toxo/app/downloads) which p…

Comment: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

`keepStandardChromosomes()` is not smart enough to know what to keep for this assembly. Note that what `keepStandardChromosomes()` means by…

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Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

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