Bioconductor GTEx

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DESeq2 recount GTEx TCGA recount3

updated 20 months ago by ATpoint ★ 4.6k • written 20 months ago by David ▴ 20

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2.6k

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recount3 TCGA GTEx DESeq2

2.6 years ago David ▴ 20

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1.5k

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DESeq2 GTEx

3.9 years ago Bine ▴ 50

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3.7k

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recount gtex

updated 6.2 years ago by Leonardo Collado Torres ★ 1.1k • written 6.2 years ago by abe • 0

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1.3k

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limma voom gtex

6.8 years ago mico • 0

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rnaseq deseq2 gtex

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by vikram • 0

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4.3k

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public data TCGA GTEx Tutorial

7.5 years ago shepherl 4.1k

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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