Bioconductor GSEABenchmarkeR

Showing : GSEABenchmarkeR • reset

0

votes

0

replies

139

views

GSEABenchmarkeR pairedGSEA GeneSetEnrichment

8 weeks ago info ▴ 10

0

votes

0

replies

221

views

GSEABenchmarkeR

3 months ago info ▴ 10

0

votes

2

replies

2.0k

views

lfcshrink GSEABenchmarkeR DESeq2

updated 17 months ago by ATpoint ★ 4.8k • written 17 months ago by delphine.rossille • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Votes

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

Comment: Filtering after DESeq

Awards • All

Great Question to inzirio ▴ 10