Bioconductor GSE

Showing : GSE • reset

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geoquery GSE

6.7 years ago mahm ▴ 20

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gene expression geoquery GSE bioconductor microarray

updated 6.7 years ago by Sean Davis 21k • written 6.7 years ago by mahm ▴ 20

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lumi microarray GSE

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by mkd12 • 0

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microarray GSE

7.5 years ago Salvo88 ▴ 20

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GSE subsetting microarray

updated 7.5 years ago by Axel Klenk ★ 1.1k • written 7.5 years ago by A ▴ 60

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geoquery error message GEOquery GSE GEO

7.7 years ago Barah ▴ 20

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GSE soft files GEO data

9.6 years ago sz • 0

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geoquery GSE identical row.names

updated 10.5 years ago by Sean Davis 21k • written 10.5 years ago by PyPer ▴ 20

8 results • Page 1 of 1

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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k