Showing : GSE • reset
2
votes
3
replies
2.0k
views
Filtering the probe set ids from GSE file
geoquery GSE
6.3 years ago mahm ▴ 20
3
votes
11
replies
2.9k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression geoquery GSE bioconductor microarray
updated 6.3 years ago by 21k • written 6.3 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi microarray GSE
updated 6.9 years ago by 52k • written 6.9 years ago by • 0
2
votes
2
replies
1.5k
views
how to obtain differentially expressed genes from a GSE serie
microarray GSE
7.1 years ago Salvo88 ▴ 20
1
vote
2
replies
1.6k
views
Subsetting GSE data with information from two different slots
GSE subsetting microarray
updated 7.1 years ago by ★ 1.0k • written 7.1 years ago by ▴ 40
0
votes
1
reply
1.7k
views
GEOquery download error
geoquery error message GEOquery GSE GEO
7.3 years ago Barah ▴ 20
0
votes
3
replies
1.8k
views
GEOquery problems while trying to process GSE soft files
GSE soft files GEO data
9.2 years ago sz • 0
1
vote
1
reply
1.4k
views
Compare Row.names and ID from GSE datasets
geoquery GSE identical row.names
updated 10.2 years ago by 21k • written 10.2 years ago by ▴ 20
8 results • Page 1 of 1
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Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
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Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
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EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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