Bioconductor GSE

Showing : GSE • reset

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2.0k

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geoquery GSE

6.4 years ago mahm ▴ 20

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2.9k

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gene expression geoquery GSE bioconductor microarray

updated 6.4 years ago by Sean Davis 21k • written 6.4 years ago by mahm ▴ 20

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1.5k

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lumi microarray GSE

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by mkd12 • 0

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1.5k

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microarray GSE

7.2 years ago Salvo88 ▴ 20

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1.6k

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GSE subsetting microarray

updated 7.2 years ago by Axel Klenk ★ 1.0k • written 7.2 years ago by A ▴ 40

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1.7k

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geoquery error message GEOquery GSE GEO

7.4 years ago Barah ▴ 20

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1.9k

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GSE soft files GEO data

9.3 years ago sz • 0

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1.4k

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geoquery GSE identical row.names

updated 10.3 years ago by Sean Davis 21k • written 10.3 years ago by PyPer ▴ 20

8 results • Page 1 of 1

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Answer: WGCNA sample-data preprocessing order by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. …

Answer: WGCNA: Can we use high power (26) for signed network? by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Answer: Ph.D. scholar by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Comment: Recount3 data correspond to TCGA data by Fep29 • 0

Hi, This the solution to mapping TCGA ids in Recount3 to the ids used in the TCGA barcodes: library(recount3) human_projects <- …

Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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