Bioconductor GSA

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810

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GSEA GSA vst

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by nhaus ▴ 70

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2.0k

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GSEA GSA

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by Bogdan ▴ 670

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1.8k

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crlmm gsa microarray illumina

written 6.8 years ago by shaun • 0

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927

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GSA

7.0 years ago Seymoo • 0

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2.5k

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gsea concept gsa

updated 8.0 years ago by Pekka Kohonen ▴ 190 • written 8.0 years ago by Lluís Revilla Sancho ▴ 760

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1.6k

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GSA

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by epercamh • 0

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1.9k

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gsea gsa

updated 8.9 years ago by Axel Klenk ★ 1.1k • written 8.9 years ago by Bogdan ▴ 670

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1.9k

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limma GSA confounding within-pair analysis 450k

9.8 years ago Aileen Bahl ▴ 10

8 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k