Bioconductor GOfuncR

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GOfuncR

updated 12 months ago by Steffi Grote ▴ 10 • written 17 months ago by Marek Gierlinski ▴ 30

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analysis R GOfuncR

updated 19 months ago by Lluís Revilla Sancho ▴ 760 • written 19 months ago by Eliza • 0

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GO.db GOfuncR GO GOSim goProfiles

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by yeluo • 0

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GOfuncR

3.3 years ago • updated 2.6 years ago capricygcapricyg ▴ 10

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GOfuncR plot_anno_scores plot_stats

updated 6.4 years ago by steffi_grote • 0 • written 6.4 years ago by rbenel ▴ 40

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Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

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