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GOexpress
•
reset
0
votes
2
replies
2.1k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
24 months ago • updated 23 months ago
Chruut
• 0
2
votes
8
replies
1.4k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.0 years ago by
kevin.rue
▴ 350 • written 2.0 years ago by
grolo
• 0
0
votes
0
replies
543
views
GOexpress pvalue and gene sets
GOexpress
2.7 years ago
jms2520
▴ 10
0
votes
4
replies
1.2k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.8 years ago by
kevin.rue
▴ 350 • written 4.8 years ago by
atorson
• 0
1
vote
2
replies
1.4k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.1 years ago by
kevin.rue
▴ 350 • written 5.1 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.2 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.4k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.8 years ago
sina.zboron
• 0
9
votes
8
replies
4.3k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.7 years ago
Bogdan
▴ 670
5
votes
4
replies
1.8k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.8 years ago by
kevin.rue
▴ 350 • written 7.8 years ago by
mforde84
▴ 20
0
votes
3
replies
4.0k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
2.8k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.7 years ago by
kevin.rue
▴ 350 • written 8.7 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.5k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.0 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
willj
▴ 30
3
votes
6
replies
2.0k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.1 years ago by
kevin.rue
▴ 350 • written 9.1 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.1k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.1 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Ai
• 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2
by
icecreamlover
• 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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