Bioconductor GOexpress

Showing : GOexpress • reset

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GOexpress GO.db GOSemSim

2.2 years ago Chruut • 0

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GOexpress

updated 2.3 years ago by kevin.rue ▴ 350 • written 2.3 years ago by grolo • 0

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576

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GOexpress

3.0 years ago jms2520 ▴ 10

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 5.0 years ago by kevin.rue ▴ 350 • written 5.0 years ago by atorson • 0

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GOexpress heatmap gene ontology plot

updated 5.3 years ago by kevin.rue ▴ 350 • written 5.3 years ago by Antonio Campos • 0

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goexpress ExpressionSet GO_analyse

5.4 years ago rezashiralmohammad • 0

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GOexpress subset_scores <0 rows>

7.0 years ago sina.zboron • 0

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goexpress gopro

7.9 years ago Bogdan ▴ 670

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gene ontology goexpress

updated 8.0 years ago by kevin.rue ▴ 350 • written 8.0 years ago by mforde84 ▴ 20

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topgo biomart gene ontology goexpress pathway analysis

updated 8.7 years ago by kevin.rue ▴ 350 • written 8.7 years ago by Darya Vanichkina ▴ 130

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2.9k

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goexpress

updated 8.9 years ago by kevin.rue ▴ 350 • written 8.9 years ago by martin.hoelzer ▴ 20

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goexpress

updated 9.3 years ago by kevin.rue ▴ 350 • written 9.3 years ago by willj ▴ 30

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software error goexpress

updated 9.3 years ago by kevin.rue ▴ 350 • written 9.3 years ago by kcamnairb ▴ 10

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GOexpress deseq2 expressionset

9.3 years ago martin.hoelzer ▴ 20

14 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0