Bioconductor GOSim

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882

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GOSim GOSemSim

updated 22 months ago by Lluís Revilla Sancho ▴ 760 • written 22 months ago by eliska.ochodkova ▴ 10

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888

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GO.db GOfuncR GO GOSim goProfiles

updated 2.2 years ago by Basti ▴ 780 • written 2.2 years ago by yeluo • 0

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1.0k

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GOSim

updated 6.2 years ago by Lluís Revilla Sancho ▴ 760 • written 6.2 years ago by monifass ▴ 10

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1.6k

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gosim gosemsim

updated 7.7 years ago by Lluís Revilla Sancho ▴ 760 • written 9.2 years ago by s.apocarpum ▴ 10

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2.2k

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GO Yeast GOSim GO Yeast GOSim

updated 7.8 years ago by solis • 0 • written 12.6 years ago by Guest User ★ 13k

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1.1k

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Yeast Organism GOSim Yeast Organism GOSim

12.2 years ago Pablo Andretta Jaskowiak ▴ 10

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925

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GOSim GOSim

12.3 years ago ANIRBAN BHAR ▴ 60

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1.5k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

updated 13.3 years ago by Olivier Lucas ▴ 40 • written 13.3 years ago by Marc Carlson ★ 7.2k

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1.3k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

13.3 years ago Olivier Lucas ▴ 40

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1.3k

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GOSim GOSim

updated 13.6 years ago by Wolfgang Huber ★ 13k • written 13.6 years ago by LEMAITRE Hervé Université Paris Sud ▴ 10

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1.4k

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Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim

updated 15.3 years ago by Marc Carlson ★ 7.2k • written 15.3 years ago by Gang Chen ▴ 20

11 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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