Showing : GO.db • reset
3
votes
1
reply
608
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 3 months ago by ★ 4.1k • written 3 months ago by ▴ 10
2
votes
5
replies
503
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 5 months ago by 67k • written 5 months ago by • 0
2
votes
17
replies
1.8k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 8 months ago by ▴ 750 • written 8 months ago by ▴ 50
0
votes
8
replies
1.1k
views
GOslim missing GO term
GO.db GOslim
10 months ago amanda • 0
0
votes
1
reply
566
views
Which species does GO.db use
GO.db annotationTools
updated 14 months ago by ▴ 750 • written 14 months ago by • 0
0
votes
0
replies
529
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
16 months ago RuBBiT0 ▴ 10
1
vote
0
replies
502
views
Typo in GO.db manual reference
GO.db
17 months ago RuBBiT0 ▴ 10
1
vote
2
replies
1.2k
views
GO.db for Bioconductor 3.17
GO.db devel
19 months ago Amanda D. Clark • 0
0
votes
2
replies
2.0k
views
Can't install GO.db
GOexpress GO.db GOSemSim
22 months ago Chruut • 0
0
votes
1
reply
832
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 24 months ago by ▴ 780 • written 24 months ago by • 0
2
votes
1
reply
2.5k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.3 years ago Lucía ▴ 20
1
vote
6
replies
1.4k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
0
votes
1
reply
2.7k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.0 years ago Yang • 0
0
votes
1
reply
1.1k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.0 years ago by 67k • written 3.0 years ago by • 0
1
vote
6
replies
2.2k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 40
0
votes
1
reply
1.1k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.2 years ago jabbar_campbell • 0
2
votes
2
replies
1.2k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.4 years ago decppced • 0
1
vote
2
replies
1.0k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.5 years ago MOHAMMAD • 0
2
votes
1
reply
1.0k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by • 0
3
votes
2
replies
2.3k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.7 years ago by 25k • written 3.7 years ago by ★ 4.1k
0
votes
4
replies
1.5k
views
GO.db package can't be installed
install GO.db
updated 3.7 years ago by 25k • written 3.7 years ago by • 0
1
vote
1
reply
1.5k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.8 years ago by 67k • written 3.8 years ago by • 0
0
votes
4
replies
1.3k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
0
votes
2
replies
1.5k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.2 years ago by 67k • written 4.2 years ago by ★ 2.0k
0
votes
1
reply
2.0k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.3 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.6k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.3 years ago by 67k • written 4.3 years ago by • 0
0
votes
4
replies
1.6k
views
Error attaching TIN
software error GO.db TIN
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
1
vote
2
replies
820
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
1
vote
4
replies
1.3k
views
Trouble installing package GO.db
GO.db
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
0
votes
1
reply
1.3k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
5
replies
4.5k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
2
votes
5
replies
1.2k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.3 years ago by 67k • written 5.3 years ago by • 0
0
votes
5
replies
1.7k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.6 years ago by 67k • written 5.6 years ago by • 0
1
vote
2
replies
1.6k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.8 years ago by 25k • written 5.8 years ago by ★ 1.1k
3
votes
3
replies
1.2k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.0 years ago by • 0 • written 6.0 years ago by ▴ 10
1
vote
1
reply
1.2k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.1 years ago by 67k • written 6.1 years ago by • 0
2
votes
2
replies
1.5k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
2
votes
2
replies
1.1k
views
Troubles installing GO.db
go.db
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 20
3
votes
8
replies
2.7k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by • 0
0
votes
0
replies
1.3k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.6 years ago crafy • 0
0
votes
3
replies
1.3k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.6 years ago dusan.petrovic • 0
0
votes
1
reply
2.5k
views
GO.db failure to install
software error go.db
6.6 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.7k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
1
reply
2.1k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
1
vote
10
replies
2.9k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.5 years ago by 67k • written 7.5 years ago by • 0
0
votes
3
replies
4.3k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.6 years ago Sidi.Ma • 0
0
votes
2
replies
1.6k
views
GO.db will not download
GO.db
7.6 years ago MOD • 0
0
votes
1
reply
1.9k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
1
vote
5
replies
5.6k
views
can not able to install go.db
go.db
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How should I run ssGSEA Hallmark Enrichment Analysis? by Ginny • 0
I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…
Comment: ISO a solution to rank-order introns by transcript by James W. MacDonald 67k
There's an error in the last line. Note that `sapply(lengths(z), seq_len)` will return a `list` because the lengths vary. We need a vector,…
Comment: BiomaRt - improved access to Ensembl ? by Mike Smith ★ 6.5k
Why do you want to use `useMart()` rather than `useEnsembl()`? They are essentially the same (`useEnsembl()` will eventually call `useMart(…
Comment: Installing Bioconductor packages in Docker by devarti.mahakalkar • 0
I have installed BiocManager on my base image rather than having it as base image. RUN Rscript -e "install.packages('BiocManager', re…
Comment: Meta-analysis on RNA-seq data sets by Travis • 0
Thank you for your suggestions and explanation of your approach!
Votes
Answer: ISO a solution to rank-order introns by transcript
Answer: ISO a solution to rank-order introns by transcript
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: addPatternDensity in 'qsea' takes too much time
Awards • All
Popular Question to Robert Castelo ★ 3.4k
Scholar to James W. MacDonald 67k
Popular Question to mat149 ▴ 80
Popular Question to Gordon Smyth 51k
Popular Question to Kevin • 0
Locations • All
United States, 9 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
Australia, 30 minutes ago
United States, 54 minutes ago
EMBL Heidelberg, 1 hour ago
Traffic: 456 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6