Bioconductor GO enrichment

Showing : GO enrichment • reset

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4.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 12 months ago by jandrade • 0 • written 7.3 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.6k

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go enrichment gene ontology goseq go

5.5 years ago Raito92 ▴ 60

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1.3k

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gosemsim go enrichment go semantic similarity

6.3 years ago nooshin ▴ 300

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2.4k

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rnaseq topgo go enrichment

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jgg • 0

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3.4k

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clusterprofiler go enrichment functional enrichment

updated 6.4 years ago by Guangchuang Yu ★ 1.2k • written 6.4 years ago by Jack ▴ 20

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1.5k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 6.8 years ago by Lluís Revilla Sancho ▴ 760 • written 6.8 years ago by eagomezc • 0

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1.1k

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goseq go enrichment

6.8 years ago mart1139 • 0

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1.9k

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chipseq go enrichment clusterprofiler

updated 7.0 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by Javier Pérez Florido ▴ 840

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4.2k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by josef.oeckl • 0

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2.5k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.1 years ago by triZZla • 0

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1.2k

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go enrichment topgo d.ananassae

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by koeniger ▴ 10

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2.6k

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bacteria GO enrichment

updated 9.7 years ago by Marc Carlson ★ 7.2k • written 9.7 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you both for your reply and your time! Sorry I didn't include this earlier but here it is (for the gene of interest): structure(…

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

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