Bioconductor GO enrichment

Showing : GO enrichment • reset

votes

replies

4.3k

views

clusterProfiler GO GO enrichment genesetenrichment

updated 8 months ago by jandrade • 0 • written 6.9 years ago by Huang, Lei [BSD] - CRI ▴ 20

votes

2.5k

views

go enrichment gene ontology goseq go

5.2 years ago Raito92 ▴ 60

votes

replies

1.1k

views

gosemsim go enrichment go semantic similarity

6.0 years ago nooshin ▴ 300

votes

replies

2.2k

views

rnaseq topgo go enrichment

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by jgg • 0

votes

2.9k

views

clusterprofiler go enrichment functional enrichment

updated 6.0 years ago by Guangchuang Yu ★ 1.2k • written 6.0 years ago by Jack ▴ 20

votes

1.3k

views

topgo ks score kolmogorov-smirnov test go enrichment

updated 6.4 years ago by Lluís Revilla Sancho ▴ 760 • written 6.4 years ago by eagomezc • 0

votes

replies

1.1k

views

goseq go enrichment

6.4 years ago mart1139 • 0

vote

1.7k

views

chipseq go enrichment clusterprofiler

updated 6.7 years ago by Guangchuang Yu ★ 1.2k • written 6.7 years ago by Javier Pérez Florido ▴ 840

votes

replies

4.0k

views

deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by josef.oeckl • 0

votes

replies

2.3k

views

org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.7 years ago by Valerie Obenchain ★ 6.8k • written 7.7 years ago by triZZla • 0

votes

1.2k

views

go enrichment topgo d.ananassae

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by koeniger ▴ 10

votes

2.4k

views

bacteria GO enrichment

updated 9.3 years ago by Marc Carlson ★ 7.2k • written 9.3 years ago by ksw ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

Yes. Samples in columns and genes in rows.

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…

Votes

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

Awards • All