Bioconductor GO enrichment

Showing : GO enrichment • reset

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4.3k

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clusterProfiler GO GO enrichment genesetenrichment

updated 7 months ago by jandrade • 0 • written 6.9 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.5k

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go enrichment gene ontology goseq go

5.1 years ago Raito92 ▴ 60

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1.1k

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gosemsim go enrichment go semantic similarity

5.9 years ago nooshin ▴ 300

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2.2k

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rnaseq topgo go enrichment

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by jgg • 0

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2.9k

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clusterprofiler go enrichment functional enrichment

updated 6.0 years ago by Guangchuang Yu ★ 1.2k • written 6.0 years ago by Jack ▴ 20

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1.3k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 6.3 years ago by Lluís Revilla Sancho ▴ 760 • written 6.4 years ago by eagomezc • 0

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1.1k

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goseq go enrichment

6.4 years ago mart1139 • 0

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1.7k

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chipseq go enrichment clusterprofiler

updated 6.6 years ago by Guangchuang Yu ★ 1.2k • written 6.6 years ago by Javier Pérez Florido ▴ 840

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3.9k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by josef.oeckl • 0

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2.3k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.7 years ago by triZZla • 0

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1.2k

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go enrichment topgo d.ananassae

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by koeniger ▴ 10

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2.4k

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bacteria GO enrichment

updated 9.3 years ago by Marc Carlson ★ 7.2k • written 9.3 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

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