Bioconductor GO enrichment

Showing : GO enrichment • reset

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4.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 13 months ago by jandrade • 0 • written 7.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.6k

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go enrichment gene ontology goseq go

5.6 years ago Raito92 ▴ 60

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1.3k

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gosemsim go enrichment go semantic similarity

6.4 years ago nooshin ▴ 300

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2.4k

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rnaseq topgo go enrichment

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jgg • 0

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3.5k

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clusterprofiler go enrichment functional enrichment

updated 6.5 years ago by Guangchuang Yu ★ 1.2k • written 6.5 years ago by Jack ▴ 20

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1.5k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 6.8 years ago by Lluís Revilla Sancho ▴ 760 • written 6.8 years ago by eagomezc • 0

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1.2k

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goseq go enrichment

6.8 years ago mart1139 • 0

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2.0k

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chipseq go enrichment clusterprofiler

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by Javier Pérez Florido ▴ 840

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4.2k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by josef.oeckl • 0

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2.6k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 8.1 years ago by Valerie Obenchain ★ 6.8k • written 8.1 years ago by triZZla • 0

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1.2k

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go enrichment topgo d.ananassae

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by koeniger ▴ 10

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2.6k

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bacteria GO enrichment

updated 9.7 years ago by Marc Carlson ★ 7.2k • written 9.7 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Votes

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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