Showing : GDCprepare • reset
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare GDCDownload
2.3 years ago Manav • 0
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GDCprepare error in TCGAbiolinks
tcgabiolinks gdcprepare differential expression
5.2 years ago fawazfebin ▴ 60
4
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5
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2.9k
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GDCprepare - error
TCGABiolinks GDCprepare
5.4 years ago vm ▴ 30
2
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2
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1.8k
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TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.5 years ago by ▴ 270 • written 5.5 years ago by ▴ 10
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5
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Issue with TCGAbiolinks package.
TCGA GDCprepare
5.9 years ago salvocomplicazioni1 • 0
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare
updated 6.0 years ago by 67k • written 6.0 years ago by • 0
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Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
7.0 years ago lisa8191 • 0
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1
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1.9k
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How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 7.5 years ago by ★ 1.5k • written 7.5 years ago by • 0
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3
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TCGA controlled data
R tcgabiolinks gdcprepare
7.6 years ago ugandhar.ch1 • 0
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Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 7.7 years ago by ▴ 260 • written 7.9 years ago by • 0
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8
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TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
8.2 years ago sabarinath.chandrasekharan ▴ 10
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1
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1.3k
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Error during GDCprepare
tcgabiolinks gdcprepare
updated 8.3 years ago by ▴ 270 • written 8.3 years ago by ▴ 10
12 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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