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GDCprepare
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987
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
2.2 years ago
Manav
• 0
0
votes
0
replies
1.7k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
5.1 years ago
fawazfebin
▴ 60
4
votes
5
replies
2.9k
views
GDCprepare - error
TCGABiolinks
GDCprepare
5.4 years ago
vm
▴ 30
2
votes
2
replies
1.8k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 5.4 years ago by
Tiago C. Silva
▴ 270 • written 5.4 years ago by
Talip
▴ 10
1
vote
5
replies
1.9k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
5.8 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.1k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
ansari.sarabio
• 0
0
votes
0
replies
983
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
6.9 years ago
lisa8191
• 0
0
votes
1
reply
1.9k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 7.4 years ago by
Dario Strbenac
★ 1.5k • written 7.4 years ago by
newbie
• 0
0
votes
3
replies
1.5k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
7.5 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.0k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 7.7 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.8 years ago by
enigmargs
• 0
0
votes
8
replies
3.0k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
8.2 years ago • updated 8.1 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.3k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 8.2 years ago by
Tiago C. Silva
▴ 270 • written 8.2 years ago by
Mariana Boroni
▴ 10
12 results • Page
1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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A: TopGO: How to retrieve the gene list related to a GO ID ?
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A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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