Showing : GDCRNATools • reset
0
votes
0
replies
394
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools TCGA
6 months ago glaciya2018 • 0
0
votes
1
reply
462
views
Error in GDCRNATools
ceRNA GDCRNATools RNASeq
updated 9 months ago by ▴ 210 • written 9 months ago by • 0
1
vote
1
reply
1.0k
views
How to sort out error in gdcCEAnalysis function of GDCRNATools R package?
GDCRNATools
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
3 results • Page 1 of 1
Recent ...
Replies
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Awards • All
Popular Question to prabin.dm • 0
Popular Question to Robert Castelo ★ 3.4k
Popular Question to Michael Stadler ▴ 350
Scholar to ATpoint ★ 4.5k
Commentator to James W. MacDonald 67k
Locations • All
San Diego, 16 minutes ago
United States, 33 minutes ago
United States, 42 minutes ago
France, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 617 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6