Bioconductor GDCPrepare

Showing : GDCPrepare • reset

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1.2k

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GDCPrepare GDCDownload

2.6 years ago Manav • 0

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1.8k

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tcgabiolinks gdcprepare differential expression

5.5 years ago fawazfebin ▴ 60

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3.1k

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TCGABiolinks GDCprepare

5.8 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 5.8 years ago by Tiago C. Silva ▴ 270 • written 5.8 years ago by Talip ▴ 10

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TCGA GDCprepare

6.2 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

7.3 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 7.8 years ago by Dario Strbenac ★ 1.6k • written 7.8 years ago by newbie • 0

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R tcgabiolinks gdcprepare

7.9 years ago ugandhar.ch1 • 0

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4.2k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.0 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.2 years ago by enigmargs • 0

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3.2k

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tcgabiolinks gdcprepare

8.5 years ago sabarinath.chandrasekharan ▴ 10

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1.4k

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tcgabiolinks gdcprepare

updated 8.6 years ago by Tiago C. Silva ▴ 270 • written 8.6 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Answer: WGCNA by ATpoint ★ 4.8k

> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …

Answer: cannot download atena annotation for human by Robert Castelo ★ 3.4k

Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…

Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Scholar to ATpoint ★ 4.8k