Bioconductor GDCDownload

Showing : GDCDownload • reset

votes

828

views

manifest GDCdownload GenomicDataCommons

20 months ago xiaofeiwang198266 • 0

votes

replies

1.2k

views

GDCPrepare GDCDownload

2.6 years ago Manav • 0

vote

1.2k

views

bioconductor GDCdownload

5.0 years ago sann • 0

votes

replies

1.2k

views

gdc data TCGA gdcdownload

6.3 years ago coyoung ▴ 10

votes

replies

1.1k

views

tcgabiolinks gdcdownload tcga-brca

7.3 years ago fawazfebin ▴ 60

votes

replies

2.8k

views

tcgabiolinks gdcdownload unzip

updated 7.3 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.3 years ago by fawazfebin ▴ 60

6 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All