Bioconductor GAGE package

Showing : GAGE package • reset

votes

replies

1.1k

views

gage package gage

6.7 years ago melkile26 • 0

vote

replies

1.5k

views

gage gage package gene expression matrix gene set analysis

6.7 years ago atakanekiz ▴ 30

votes

replies

3.2k

views

gage package error

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Miskey, Csaba ▴ 20

votes

replies

4.2k

views

gage gage package pathview rna-seq

updated 3.1 years ago by Helen • 0 • written 7.1 years ago by tarun2 • 0

votes

replies

2.3k

views

kegg geneset genelist gage package

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by sup230 ▴ 30

vote

replies

1.7k

views

gage package deseq2

7.7 years ago sup230 ▴ 30

votes

replies

1.9k

views

gage gage package

updated 8.4 years ago by Luo Weijun ★ 1.6k • written 8.5 years ago by Michael • 0

vote

replies

1.7k

views

R gage package rnaseq pathview

8.6 years ago joanito.liberti • 0

votes

1.1k

views

gage package path.ids RNA-Seq

8.7 years ago rl1385 • 0

votes

replies

1.1k

views

t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

8.8 years ago smt8n • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All