Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
6.4 years ago melkile26 • 0
1
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2
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1.4k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.4 years ago atakanekiz ▴ 30
5
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7
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3.0k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 20
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2
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4.0k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.8 years ago by • 0 • written 6.9 years ago by • 0
2
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4
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2.2k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.4 years ago by 52k • written 7.4 years ago by ▴ 30
1
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0
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1.6k
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DESeq2 - GAGE workflow
gage package deseq2
7.4 years ago sup230 ▴ 30
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2
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1.8k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.1 years ago by ★ 1.6k • written 8.2 years ago by • 0
1
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2
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1.6k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.4 years ago joanito.liberti • 0
0
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1
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.4 years ago rl1385 • 0
0
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0
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1.1k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.5 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
@[sandtrix][1] This is useful information. [1]: https://sandtrix.io
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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