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Foldchange
•
reset
1
vote
2
replies
562
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How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
6 months ago
Sabiha
▴ 20
1
vote
1
reply
2.7k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 11 months ago by
Rory Stark
★ 5.2k • written 11 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
924
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
12 months ago
bhandary.8590
▴ 20
0
votes
2
replies
1.7k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.3 years ago by
Michael Love
42k • written 2.3 years ago by
dadca596
• 0
0
votes
1
reply
945
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.5 years ago by
Gordon Smyth
51k • written 2.5 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.5 years ago by
Michael Love
42k • written 2.5 years ago by
yampolsk
• 0
3
votes
5
replies
5.2k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.8 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.4k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
najib
• 0
0
votes
7
replies
2.5k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.6 years ago by
Gordon Smyth
51k • written 3.6 years ago by
lessismore
▴ 20
4
votes
5
replies
1.4k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.4 years ago by
Gordon Smyth
51k • written 4.4 years ago by
Pietro
▴ 40
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.2 years ago by
Michael Love
42k • written 5.5 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.5k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.4 years ago • updated 5.3 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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