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StatisticalMethod FoldChange edgeR RNASeq

15 months ago Sabiha ▴ 20

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4.9k

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FoldChange DiffBind lfcShrink

updated 20 months ago by Rory Stark ★ 5.2k • written 21 months ago by bhandary.8590 ▴ 20

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FoldChange DiffBind lfcShrink Cut&TagData

21 months ago bhandary.8590 ▴ 20

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DESeq2 TPM Foldchange

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.2 years ago by Gordon Smyth 52k • written 3.2 years ago by johndavidgriner74 • 0

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1.5k

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sign FoldChange DESeq2 reference

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by yampolsk • 0

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DifferentialExpression DEA FC FoldChange edgeR

3.6 years ago zhxiaokang ▴ 20

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3.0k

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EdgeR RNAseq Foldchange

updated 3.7 years ago by swbarnes2 ★ 1.4k • written 3.8 years ago by najib • 0

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3.9k

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foldchange topGO DifferentialExpression enrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by lessismore ▴ 20

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1.8k

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limma microarray foldchange DEG GEO

updated 5.1 years ago by Gordon Smyth 52k • written 5.2 years ago by Pietro ▴ 40

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.9 years ago by Michael Love 43k • written 6.2 years ago by fiona.dick91 ▴ 60

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limma RNAseq foldchange

6.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

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