Bioconductor Foldchange

Showing : Foldchange • reset

vote

replies

955

views

StatisticalMethod FoldChange edgeR RNASeq

14 months ago Sabiha ▴ 20

vote

4.8k

views

FoldChange DiffBind lfcShrink

updated 19 months ago by Rory Stark ★ 5.2k • written 19 months ago by bhandary.8590 ▴ 20

votes

replies

1.3k

views

FoldChange DiffBind lfcShrink Cut&TagData

20 months ago bhandary.8590 ▴ 20

votes

replies

2.1k

views

DESeq2 TPM Foldchange

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by dadca596 • 0

votes

1.2k

views

edgeR RNA-Seq log2 foldchange q_value

updated 3.1 years ago by Gordon Smyth 52k • written 3.1 years ago by johndavidgriner74 • 0

votes

replies

1.5k

views

sign FoldChange DESeq2 reference

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by yampolsk • 0

votes

replies

6.7k

views

DifferentialExpression DEA FC FoldChange edgeR

3.5 years ago zhxiaokang ▴ 20

votes

replies

2.9k

views

EdgeR RNAseq Foldchange

updated 3.7 years ago by swbarnes2 ★ 1.4k • written 3.7 years ago by najib • 0

votes

replies

3.7k

views

foldchange topGO DifferentialExpression enrichment

updated 4.3 years ago by Gordon Smyth 52k • written 4.3 years ago by lessismore ▴ 20

votes

replies

1.8k

views

limma microarray foldchange DEG GEO

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by Pietro ▴ 40

vote

1.6k

views

DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.9 years ago by Michael Love 43k • written 6.1 years ago by fiona.dick91 ▴ 60

votes

replies

1.7k

views

limma RNAseq foldchange

6.0 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All