Showing : Foldchange • reset
1
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2
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
13 months ago Sabiha ▴ 20
1
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1
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4.6k
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 18 months ago by ★ 5.2k • written 18 months ago by ▴ 20
4
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4
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1.3k
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
19 months ago bhandary.8590 ▴ 20
0
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2
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2.0k
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DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2 TPM Foldchange
updated 2.8 years ago by 43k • written 2.8 years ago by • 0
0
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1
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1.1k
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 3.1 years ago by 52k • written 3.1 years ago by • 0
0
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2
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1.5k
views
sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
3
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5
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6.5k
views
How does edgeR calculate fold change?
DifferentialExpression DEA FC FoldChange edgeR
3.4 years ago zhxiaokang ▴ 20
2
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9
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2.9k
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 3.6 years ago by ★ 1.4k • written 3.6 years ago by • 0
0
votes
7
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3.4k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.2 years ago by 52k • written 4.2 years ago by ▴ 20
4
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5
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1.7k
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All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 40
1
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1
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1.6k
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rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 5.8 years ago by 43k • written 6.0 years ago by ▴ 60
5
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4
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1.6k
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Foldchange values Limma
limma RNAseq foldchange
5.9 years ago susana.amaral.teixeira ▴ 20
12 results • Page 1 of 1
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Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
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