Showing : Foldchange • reset
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
16 months ago Sabiha ▴ 20
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 21 months ago by ★ 5.2k • written 21 months ago by ▴ 20
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
22 months ago bhandary.8590 ▴ 20
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DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2 TPM Foldchange
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 3.3 years ago by 52k • written 3.3 years ago by • 0
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sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
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How does edgeR calculate fold change?
DifferentialExpression DEA FC FoldChange edgeR
3.6 years ago zhxiaokang ▴ 20
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 3.8 years ago by ★ 1.4k • written 3.8 years ago by • 0
0
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7
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 20
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All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 5.2 years ago by 52k • written 5.2 years ago by ▴ 40
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rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 6.0 years ago by 43k • written 6.3 years ago by ▴ 60
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Foldchange values Limma
limma RNAseq foldchange
6.2 years ago • updated 6.1 years ago susana.amaral.teixeira ▴ 20
12 results • Page 1 of 1
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Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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