Showing : FoldChange • reset
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
11 months ago • updated 10 months ago Sabiha ▴ 20
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 15 months ago by ★ 5.2k • written 16 months ago by ▴ 20
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4
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
17 months ago • updated 16 months ago bhandary.8590 ▴ 20
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DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2 TPM Foldchange
updated 2.6 years ago by 42k • written 2.6 years ago by • 0
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1.1k
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.8 years ago by 51k • written 2.8 years ago by • 0
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2
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1.4k
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sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 2.9 years ago by 42k • written 2.9 years ago by • 0
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5
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How does edgeR calculate fold change?
DifferentialExpression DEA FC FoldChange edgeR
3.2 years ago zhxiaokang ▴ 20
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9
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2.7k
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 3.4 years ago by ★ 1.4k • written 3.4 years ago by • 0
0
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7
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.0 years ago by 51k • written 4.0 years ago by ▴ 20
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5
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All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 40
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1
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1.6k
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rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 5.6 years ago by 42k • written 5.8 years ago by ▴ 60
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4
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Foldchange values Limma
limma RNAseq foldchange
5.7 years ago susana.amaral.teixeira ▴ 20
12 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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