Bioconductor FoldChange

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StatisticalMethod FoldChange edgeR RNASeq

13 months ago Sabiha ▴ 20

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4.6k

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FoldChange DiffBind lfcShrink

updated 18 months ago by Rory Stark ★ 5.2k • written 18 months ago by bhandary.8590 ▴ 20

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1.3k

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FoldChange DiffBind lfcShrink Cut&TagData

19 months ago bhandary.8590 ▴ 20

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2.0k

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DESeq2 TPM Foldchange

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by dadca596 • 0

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1.1k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.0 years ago by Gordon Smyth 52k • written 3.0 years ago by johndavidgriner74 • 0

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1.4k

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sign FoldChange DESeq2 reference

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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6.4k

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DifferentialExpression DEA FC FoldChange edgeR

3.4 years ago zhxiaokang ▴ 20

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2.8k

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EdgeR RNAseq Foldchange

updated 3.5 years ago by swbarnes2 ★ 1.4k • written 3.6 years ago by najib • 0

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3.3k

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foldchange topGO DifferentialExpression enrichment

updated 4.2 years ago by Gordon Smyth 52k • written 4.2 years ago by lessismore ▴ 20

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1.7k

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limma microarray foldchange DEG GEO

updated 4.9 years ago by Gordon Smyth 52k • written 5.0 years ago by Pietro ▴ 40

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.7 years ago by Michael Love 43k • written 6.0 years ago by fiona.dick91 ▴ 60

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1.6k

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limma RNAseq foldchange

5.9 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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