Bioconductor Fold Change

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6.3k

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R deseq2 edger differential gene expression fold change

updated 3.0 years ago by ATpoint ★ 4.8k • written 6.8 years ago by Beginner ▴ 60

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2.8k

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diffBind Fold Change

updated 3.9 years ago by Joe Nicholas • 0 • written 6.3 years ago by joseluis.ruiz • 0

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1.7k

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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1.2k

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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1.7k

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ballgown stattest fold change

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Claudia ▴ 10

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2.9k

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edgeR DE analysis fold change cpm

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sara ▴ 20

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

GSVA ssGSEA vs. Broad implementation of ssGSEA

Comment: biomaRt server error, and mirrors do not help

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