Bioconductor Filter

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filter deseq2

updated 22 months ago by Michael Love 43k • written 22 months ago by PD • 0

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R filter limma Normalization Microarray

22 months ago Abdul ▴ 20

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740

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filter gate_quad_tmix gt_gating

2.9 years ago • updated 2.8 years ago Pierre • 0

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922

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flowCore openCyto Summary Result Filter

updated 4.8 years ago by Jake Wagner ▴ 310 • written 4.9 years ago by noviello • 0

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RNA WGCNA filter

5.6 years ago modarzi ▴ 10

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filter deseq2

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by charles.foster ▴ 160

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1.4k

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rtracklayer gff filter

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by alslonik • 0

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deseq2 filter genefilter

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by Björn • 0

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loop filter

written 7.3 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by bi_Scholar • 0

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missing data filter

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 9.4 years ago by Jiang, Mike ★ 1.3k • written 9.4 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

10.0 years ago alakatos ▴ 130

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3.9k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.0 years ago by James W. MacDonald 68k • written 10.0 years ago by svlachavas ▴ 840

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3.4k

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deseq filter reads

10.1 years ago ccheung • 0

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1.5k

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variantannotation vcf fixed filter

10.1 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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