Bioconductor Filter

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969

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filter deseq2

updated 19 months ago by Michael Love 42k • written 19 months ago by PD • 0

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1.2k

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R filter limma Normalization Microarray

19 months ago Abdul ▴ 20

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690

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filter gate_quad_tmix gt_gating

2.7 years ago • updated 2.6 years ago Pierre • 0

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859

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flowCore openCyto Summary Result Filter

updated 4.5 years ago by Jake Wagner ▴ 310 • written 4.7 years ago by noviello • 0

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1.6k

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RNA WGCNA filter

5.4 years ago modarzi ▴ 10

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955

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filter deseq2

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by charles.foster ▴ 160

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1.3k

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rtracklayer gff filter

updated 5.8 years ago by Michael Lawrence ★ 11k • written 5.8 years ago by alslonik • 0

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2.0k

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deseq2 filter genefilter

updated 7.0 years ago by Michael Love 42k • written 7.1 years ago by Björn • 0

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4.1k

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loop filter

written 7.0 years ago by kritikamish99 ▴ 10

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3.6k

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DGElist filter edgeR

updated 7.4 years ago by Gordon Smyth 51k • written 7.4 years ago by alakatos ▴ 130

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1.4k

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limma filter genelist differential gene expression

updated 8.1 years ago by Gordon Smyth 51k • written 8.1 years ago by bi_Scholar • 0

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1.1k

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missing data filter

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by rgescudero • 0

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1.4k

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flowcore gate subsetting filter

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.2 years ago by peterfoster ▴ 20

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2.9k

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probe filter subset gene symbol affy

9.7 years ago alakatos ▴ 130

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3.8k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.8 years ago by James W. MacDonald 67k • written 9.8 years ago by svlachavas ▴ 830

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3.3k

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deseq filter reads

9.9 years ago • updated 9.8 years ago ccheung • 0

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1.5k

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variantannotation vcf fixed filter

9.9 years ago Anna N. • 0

17 results • Page 1 of 1

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Votes

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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