Bioconductor Filter

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filter deseq2

updated 18 months ago by Michael Love 42k • written 18 months ago by PD • 0

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R filter limma Normalization Microarray

19 months ago Abdul ▴ 20

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682

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filter gate_quad_tmix gt_gating

2.6 years ago • updated 2.5 years ago Pierre • 0

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846

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flowCore openCyto Summary Result Filter

updated 4.5 years ago by Jake Wagner ▴ 310 • written 4.6 years ago by noviello • 0

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RNA WGCNA filter

5.3 years ago modarzi ▴ 10

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filter deseq2

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by charles.foster ▴ 160

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rtracklayer gff filter

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by alslonik • 0

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deseq2 filter genefilter

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by Björn • 0

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loop filter

written 7.0 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 7.3 years ago by Gordon Smyth 51k • written 7.3 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 8.1 years ago by Gordon Smyth 51k • written 8.1 years ago by bi_Scholar • 0

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missing data filter

updated 8.9 years ago by James W. MacDonald 67k • written 8.9 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 9.1 years ago by Jiang, Mike ★ 1.3k • written 9.1 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.7 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.7 years ago by James W. MacDonald 67k • written 9.7 years ago by svlachavas ▴ 830

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deseq filter reads

9.8 years ago ccheung • 0

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variantannotation vcf fixed filter

9.8 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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