Bioconductor Filter

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1.2k

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filter deseq2

updated 2.0 years ago by Michael Love 43k • written 2.0 years ago by PD • 0

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1.5k

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R filter limma Normalization Microarray

2.0 years ago Abdul ▴ 20

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757

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filter gate_quad_tmix gt_gating

3.1 years ago • updated 3.0 years ago Pierre • 0

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976

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flowCore openCyto Summary Result Filter

updated 5.0 years ago by Jake Wagner ▴ 310 • written 5.1 years ago by noviello • 0

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1.8k

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RNA WGCNA filter

5.8 years ago modarzi ▴ 10

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1.1k

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filter deseq2

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by charles.foster ▴ 180

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1.4k

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rtracklayer gff filter

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by alslonik • 0

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2.2k

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deseq2 filter genefilter

updated 7.4 years ago by Michael Love 43k • written 7.5 years ago by Björn • 0

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4.3k

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loop filter

written 7.5 years ago by kritikamish99 ▴ 10

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3.9k

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DGElist filter edgeR

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

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1.5k

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limma filter genelist differential gene expression

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by bi_Scholar • 0

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1.2k

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missing data filter

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by rgescudero • 0

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1.5k

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flowcore gate subsetting filter

updated 9.6 years ago by Jiang, Mike ★ 1.3k • written 9.6 years ago by peterfoster ▴ 20

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3.0k

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probe filter subset gene symbol affy

10.2 years ago alakatos ▴ 130

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4.0k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by svlachavas ▴ 840

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3.4k

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deseq filter reads

10.3 years ago ccheung • 0

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1.6k

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variantannotation vcf fixed filter

10.3 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Votes

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

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