Bioconductor Filter

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filter deseq2

updated 23 months ago by Michael Love 43k • written 23 months ago by PD • 0

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R filter limma Normalization Microarray

24 months ago Abdul ▴ 20

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750

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filter gate_quad_tmix gt_gating

3.1 years ago • updated 2.9 years ago Pierre • 0

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959

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flowCore openCyto Summary Result Filter

updated 4.9 years ago by Jake Wagner ▴ 310 • written 5.0 years ago by noviello • 0

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RNA WGCNA filter

5.8 years ago modarzi ▴ 10

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filter deseq2

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by charles.foster ▴ 180

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rtracklayer gff filter

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by alslonik • 0

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deseq2 filter genefilter

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by Björn • 0

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loop filter

written 7.4 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by bi_Scholar • 0

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missing data filter

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 9.6 years ago by Jiang, Mike ★ 1.3k • written 9.6 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

10.1 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by svlachavas ▴ 840

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deseq filter reads

10.2 years ago ccheung • 0

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variantannotation vcf fixed filter

10.2 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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