Bioconductor ExperimentalDesign

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DESeq2 RNASeqData deseq2 ExperimentalDesign

updated 15 months ago by swbarnes2 ★ 1.4k • written 15 months ago by Sam • 0

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833

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hypothesisTesting contrastCoding edger ExperimentalDesign expressionDifferences

updated 21 months ago by Gordon Smyth 52k • written 21 months ago by Hannes • 0

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970

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.4 years ago by ATpoint ★ 4.6k • written 2.4 years ago by Mohamed ▴ 30

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1.4k

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ExperimentalDesign RNASeq DifferentialExpression DESeq2

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by Aurélien • 0

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1.2k

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SingleCellExperiment scater ExperimentalDesign scran

3.0 years ago • updated 2.9 years ago msn ▴ 10

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ChIPSeq DiffBind ExperimentalDesign

4.0 years ago • updated 3.9 years ago SFn • 0

6 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k