Bioconductor Exon

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DEXSeq exon_definition exon

updated 12 months ago by Alejandro Reyes ★ 1.9k • written 12 months ago by zhangpeng1202 • 0

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418

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exon AnnotationHubData

14 months ago mahima.g • 0

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932

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splicing Exon featureCounts subread DEXSeq

2.1 years ago NIK • 0

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705

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DEXSeq exon

updated 2.3 years ago by Alejandro Reyes ★ 1.9k • written 2.3 years ago by jochen • 0

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1.4k

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DEXSeq exon memory dispersions estimateDispersions

4.2 years ago andreismolnikov00 • 0

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1.5k

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Annotatr CDS Exon UTR

updated 6.4 years ago by rcavalca ▴ 140 • written 6.4 years ago by xie186 • 0

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2.9k

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rsubread featurecounts exon mRNAseq

updated 7.1 years ago by Wei Shi ★ 3.6k • written 7.1 years ago by inah ▴ 10

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1.8k

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rnaseq exon quasr

updated 9.6 years ago by Steve Lianoglou ★ 13k • written 9.6 years ago by sven.schuierer • 0

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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