Bioconductor EpicV2

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2.0k

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EpicV2 ChAMPdata

updated 3 months ago by icecreamlover • 0 • written 4 months ago by nurkenber • 0

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3.2k

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ChAMP EPICv2

updated 4 months ago by Ricky • 0 • written 20 months ago by medha.suman • 0

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240

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EpicV2 DMRcate

4 months ago kitzhu • 0

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1.2k

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sesame EPICv2manifest epicv2

8 months ago luca.s ▴ 50

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829

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sesameData EPICv2 EPICv1

updated 4 months ago by zhouwanding ▴ 20 • written 8 months ago by archibold.mposhi • 0

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860

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limma DMRcate MethylationArray EPICV2

updated 8 months ago by Gordon Smyth 52k • written 9 months ago by Kim • 0

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1.7k

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DNAMethylation GO MethylationArray missMethyl EPICv2

11 months ago • updated 5 months ago s.malik • 0

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1.7k

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by rae.alshammari ▴ 10

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2.6k

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ChAMP EPICv2

updated 3 months ago by icecreamlover • 0 • written 13 months ago by ChunkyJones • 0

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1.6k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 11 months ago by aldea85 • 0 • written 15 months ago by Courtney • 0

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2.8k

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minfiDataEPIC EpicV2

updated 17 months ago by Zuguang Gu ▴ 290 • written 18 months ago by Izabela.ams • 0

11 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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