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EmptyDrops
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0
votes
2
replies
319
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Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
3 months ago
rocanja
▴ 60
0
votes
1
reply
743
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 14 months ago by
Peter Hickey
▴ 740 • written 14 months ago by
sandra.garces.19
• 0
4
votes
5
replies
2.6k
views
`emptyDrops()` calling 'too many' non-empty droplets
DropletUtils
emptyDrops
scRNA
scRNAseq
10x
23 months ago • updated 22 months ago
Peter Hickey
▴ 740
1
vote
1
reply
1.1k
views
Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
DropletUtils
emptyDrops
10x
updated 3.4 years ago by
Aaron Lun
★ 28k • written 3.4 years ago by
Peter Hickey
▴ 740
4
votes
5
replies
2.1k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 3.7 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
C T
▴ 140
5
votes
1
reply
4.6k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 23 months ago by
Stefano Mangiola
▴ 10 • written 4.9 years ago by
shbrief
▴ 20
0
votes
2
replies
1.1k
views
Scalability of emptyDrops() running times
dropletutils
emptydrops
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
rosano
• 0
7 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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