Bioconductor EmptyDrops

Showing : EmptyDrops • reset

votes

replies

581

views

CellRanger emptyDrops scRNAseq 10X

8 months ago rocanja ▴ 60

votes

943

views

SingleCell emptyDrops 10X

updated 18 months ago by Peter Hickey ▴ 740 • written 18 months ago by sandra.garces.19 • 0

votes

replies

3.1k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

2.3 years ago Peter Hickey ▴ 740

vote

1.2k

views

DropletUtils emptyDrops 10x

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Peter Hickey ▴ 740

votes

replies

2.3k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.1 years ago by Aaron Lun ★ 28k • written 5.2 years ago by C T ▴ 140

votes

4.9k

views

DropletUtils EmptyDrops simpleSingleCell

updated 2.3 years ago by Stefano Mangiola ▴ 20 • written 5.3 years ago by shbrief ▴ 20

votes

replies

1.3k

views

dropletutils emptydrops

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by rosano • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

Yes. Samples in columns and genes in rows.

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…

Votes

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

Awards • All