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EmptyDrops
•
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0
votes
2
replies
629
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
9 months ago
rocanja
▴ 60
0
votes
1
reply
981
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 19 months ago by
Peter Hickey
▴ 740 • written 19 months ago by
sandra.garces.19
• 0
4
votes
5
replies
3.2k
views
`emptyDrops()` calling 'too many' non-empty droplets
DropletUtils
emptyDrops
scRNA
scRNAseq
10x
2.4 years ago
Peter Hickey
▴ 740
1
vote
1
reply
1.2k
views
Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
DropletUtils
emptyDrops
10x
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
Peter Hickey
▴ 740
4
votes
5
replies
2.3k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 4.2 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
C T
▴ 140
5
votes
1
reply
5.0k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 2.4 years ago by
Stefano Mangiola
▴ 20 • written 5.4 years ago by
shbrief
▴ 20
0
votes
2
replies
1.3k
views
Scalability of emptyDrops() running times
dropletutils
emptydrops
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
rosano
• 0
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Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
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52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
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For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
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