Bioconductor ERCC

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1.0k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.3 years ago • updated 3.2 years ago Mallory ▴ 10

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3.4k

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ERCC rna-seq edgeR tmm normalised values

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by what_theheck24 • 0

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16k

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RNAseq deseq2 ercc

updated 8.2 years ago by Simon Anders ★ 3.8k • written 8.2 years ago by mbeckste ▴ 30

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8.0k

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limma voom deseq normalization ercc

updated 9.1 years ago by Gordon Smyth 52k • written 9.1 years ago by komal.rathi ▴ 120

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5.7k

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edger ercc

10.1 years ago John ▴ 10

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3.1k

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seqc rsubread featurecounts subjunc ercc News

10.2 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Answer: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Before you try to use a function, you should read the help page to ensure that you are using the correct argument type. As an example, here…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

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Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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