Showing : ERCC • reset
1
vote
1
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960
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Incorporating RUVg results into ImpulseDE2 model
ImpulseDE2 ImpulseDE ERCC RUVSeq
3.1 years ago • updated 3.0 years ago Mallory ▴ 10
3
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2
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3.2k
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Using the ERCC spike as a normalization factor for a custom algorithm
ERCC rna-seq edgeR tmm normalised values
updated 7.7 years ago by ★ 28k • written 7.7 years ago by • 0
27
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7
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15k
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Usability of ERCC spike-ins in standard RNAseq experiments
RNAseq deseq2 ercc
updated 8.1 years ago by ★ 3.8k • written 8.1 years ago by ▴ 30
16
votes
5
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7.9k
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DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
limma voom deseq normalization ercc
updated 9.0 years ago by 51k • written 9.0 years ago by ▴ 120
8
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5
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5.6k
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edgeR and Normalization of RNAseq data using ERCC controls
edger ercc
9.9 years ago John ▴ 10
9
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4
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3.1k
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
10.0 years ago Wei Shi ★ 3.6k
6 results • Page 1 of 1
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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open! by Esperan • 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Votes
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
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