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EPICv2
•
reset
1
vote
2
replies
1.1k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
20 days ago • updated 13 days ago
Joshua Llano
• 0
2
votes
7
replies
2.9k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 5 months ago by
icecreamlover
• 0 • written 6 months ago by
nurkenber
• 0
1
vote
9
replies
3.4k
views
Error using champ.import
ChAMP
EPICv2
updated 5 months ago by
Ricky
• 0 • written 21 months ago by
medha.suman
• 0
0
votes
0
replies
291
views
DMRcate pcutoff setting
EpicV2
DMRcate
6 months ago
kitzhu
• 0
1
vote
3
replies
1.5k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
9 months ago
luca.s
▴ 50
0
votes
2
replies
1.0k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 5 months ago by
zhouwanding
▴ 20 • written 10 months ago by
archibold.mposhi
• 0
3
votes
2
replies
906
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 10 months ago by
Gordon Smyth
52k • written 11 months ago by
Kim
• 0
1
vote
3
replies
1.9k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
13 months ago • updated 6 months ago
s.malik
• 0
0
votes
4
replies
1.9k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
2.9k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 5 months ago by
icecreamlover
• 0 • written 15 months ago by
ChunkyJones
• 0
3
votes
5
replies
1.8k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 12 months ago by
aldea85
• 0 • written 17 months ago by
Courtney
▴ 10
0
votes
6
replies
2.9k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 18 months ago by
Zuguang Gu
▴ 290 • written 19 months ago by
Izabela.ams
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
skiaphrene
▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
shocked.tick.zyet
• 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage
by
Nick
• 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
Votes
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
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Gordon Smyth
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