Bioconductor EPIC microarray

Showing : EPIC microarray • reset

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champ epic microarray normalization minfi

6.5 years ago Laura • 0

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minfi epic microarray bioconductor

updated 2.4 years ago by Lucy • 0 • written 6.7 years ago by c.sae-lee2 • 0

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bioconductor methylation epic microarray champ

6.9 years ago csappleby-mallinder1 • 0

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methylation epic microarray minfi methylationepic

7.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.8 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

8.3 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Biologist ▴ 120

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minfi methylation EPIC microarray illumina

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by rasii • 0

8 results • Page 1 of 1

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Votes

Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Awards • All

Scholar to James W. MacDonald 67k