Showing : EBSeq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.5 years ago lli2 • 0
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3
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1.1k
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Heatmap for ebseq2 output
ebseq
5.5 years ago drkousi31 • 0
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1
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.4 years ago jean.keller ▴ 10
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1.1k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.5 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.1 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.4 years ago jbarker2 • 0
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1.5k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.4 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.6 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.5 years ago by 67k • written 10.5 years ago by ▴ 10
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1.8k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by 51k
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2.0k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.8 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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