Showing : EBSeq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.6 years ago lli2 • 0
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3
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1.2k
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Heatmap for ebseq2 output
ebseq
5.7 years ago drkousi31 • 0
5
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.5 years ago by ★ 28k • written 6.5 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.5 years ago jean.keller ▴ 10
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1.1k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.6 years ago jean.keller ▴ 10
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1.4k
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.2 years ago vieuphoria ▴ 10
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1.0k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.5 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.5 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.7 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.7 years ago by 67k • written 10.7 years ago by ▴ 10
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1.8k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by 52k
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2.0k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.8 years ago by ▴ 10 • written 10.8 years ago by ▴ 100
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1.2k
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.0 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
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