Bioconductor Designmatrix

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limma DifferentialExpression Designmatrix

4 months ago Tadeoye ▴ 20

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DESeq2 Designmatrix limma

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by Neha • 0

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762

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subsettingdata edgeR designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by prity6459 • 0

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limma designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

2.4 years ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.5 years ago by Gordon Smyth 52k • written 3.5 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 3.5 years ago by swbarnes2 ★ 1.4k • written 3.5 years ago by OST • 0

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designmatrix RNA-seq limma

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.2 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

4.2 years ago Debayan ▴ 20

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edgeR pairedsamples designmatrix

4.2 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Beginner ▴ 60

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Limma designMatrix

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by nashchem • 0

16 results • Page 1 of 1

Recent ...

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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to sergisayolspuig ▴ 80

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k