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Designmatrix
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405
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma
DifferentialExpression
Designmatrix
3 months ago
Tadeoye
▴ 20
0
votes
1
reply
422
views
Deseq2 design matrix
DESeq2
Designmatrix
limma
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
Neha
• 0
0
votes
3
replies
731
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 11 months ago by
Gordon Smyth
52k • written 11 months ago by
prity6459
• 0
0
votes
1
reply
444
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 12 months ago by
Gordon Smyth
52k • written 12 months ago by
avery
• 0
3
votes
5
replies
1.4k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 2.2 years ago by
Michael Love
43k • written 2.2 years ago by
aditya.m
▴ 10
4
votes
6
replies
1.6k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
2.3 years ago
Abdul
▴ 20
2
votes
4
replies
1.8k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 3.4 years ago by
Gordon Smyth
52k • written 3.5 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
1.5k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 3.5 years ago by
swbarnes2
★ 1.4k • written 3.5 years ago by
OST
• 0
1
vote
2
replies
1.4k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 4.0 years ago by
Gordon Smyth
52k • written 4.0 years ago by
athief
▴ 20
1
vote
0
replies
882
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
4.1 years ago
nageshprabhu.k
▴ 10
2
votes
4
replies
1.3k
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
4.1 years ago
Debayan
▴ 20
0
votes
2
replies
1.3k
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
4.2 years ago • updated 4.1 years ago
sfidemw
• 0
0
votes
2
replies
1.0k
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
anshulmbi
• 0
0
votes
2
replies
1.1k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Beginner
▴ 60
2
votes
6
replies
1.4k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
Keifa
▴ 10
2
votes
4
replies
1.6k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
nashchem
• 0
16 results • Page
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Comment: Question on displaying color photo as Greyscale in EBImage
by
Albert
• 0
great and very nice
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The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions
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I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
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[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Comment: How to do simple Fisher' exact test for overlapped genomic interval in R?
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I was unable to find the overlapping genome because it is too old to use [ragdoll archers][1] [1]: https://ragdollarchers.com/
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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