Bioconductor Designmatrix

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322

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limma DifferentialExpression Designmatrix

7 weeks ago Tadeoye ▴ 20

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369

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DESeq2 Designmatrix limma

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by Neha • 0

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645

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subsettingdata edgeR designmatrix

updated 9 months ago by Gordon Smyth 52k • written 9 months ago by prity6459 • 0

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404

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limma designmatrix

updated 9 months ago by Gordon Smyth 52k • written 9 months ago by avery • 0

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1.3k

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.0 years ago by Michael Love 43k • written 2.0 years ago by aditya.m ▴ 10

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1.5k

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R designmatrix edgeR limma model.matrix

2.1 years ago Abdul ▴ 20

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1.7k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.3 years ago by Gordon Smyth 52k • written 3.3 years ago by rebecca.lea.johnston • 0

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1.4k

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designmatrix deseq2 DESeq2

updated 3.3 years ago by swbarnes2 ★ 1.4k • written 3.3 years ago by OST • 0

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1.4k

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designmatrix RNA-seq limma

updated 3.8 years ago by Gordon Smyth 52k • written 3.9 years ago by athief ▴ 20

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848

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designmatrix DifferentialExpression edgeR RNAseq

4.0 years ago • updated 3.9 years ago nageshprabhu.k ▴ 10

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1.2k

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MutlipleFactors DesignMatrix edgeR

4.0 years ago Debayan ▴ 20

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1.2k

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edgeR pairedsamples designmatrix

4.0 years ago sfidemw • 0

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936

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deseq2 miRNASeq designmatrix Batch

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by anshulmbi • 0

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1.1k

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edger r differentialanalysis rnaseq designmatrix

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Beginner ▴ 60

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Limma designMatrix

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Keifa ▴ 10

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1.5k

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limma microarray designmatrix

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0