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Dese
•
reset
2
votes
2
replies
544
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
5 months ago
BioinfGuru
▴ 70
0
votes
1
reply
383
views
collapseReplicates dimension error
DESeq2
Dese
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Léa
• 0
0
votes
3
replies
553
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 11 months ago by
Xu
• 0
0
votes
2
replies
565
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
12 months ago
pl23
• 0
0
votes
2
replies
861
views
Linear Model Fitting and Colinearity
dese
DESeq2
14 months ago
Hugo
• 0
0
votes
5
replies
1.1k
views
DESeq2 analysis
DESe
DESeq2
18 months ago
Adèle
• 0
0
votes
2
replies
1.7k
views
Handling NA's in Deseq2
Dese
DESeq2
20 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Alina
• 0
4
votes
5
replies
1.8k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 8 months ago by
ij283
• 0 • written 22 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.1k
views
Merging two plated in R
dese
DESeq2
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.7 years ago by
Basti
▴ 780 • written 2.7 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.0 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
792
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
hpapoli
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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