Showing : DelayedArray • reset
2
votes
3
replies
705
views
EBImage Rendering of a DelayedArray Object
DelayedArray EBImage cytomapper
updated 8 months ago by ★ 13k • written 8 months ago by ★ 1.6k
2
votes
5
replies
2.1k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 17 months ago by 43k • written 17 months ago by • 0
1
vote
6
replies
1.3k
views
DelayedArray::read_sparse_block
DelayedArray
updated 19 months ago by 16k • written 20 months ago by ▴ 10
0
votes
10
replies
2.6k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray TileDBArray
updated 13 days ago by • 0 • written 19 months ago by ▴ 70
1
vote
5
replies
2.1k
views
rowsum or similar for RleArray?
delayedarray rowsum
written 7.7 years ago by ▴ 180
1
vote
1
reply
1.4k
views
Could not find function ".read_block_OLD"
DelayedArray S4Arrays
updated 23 months ago by 16k • written 23 months ago by • 0
2
votes
4
replies
2.7k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment S4Arrays DelayedArray
updated 23 months ago by 16k • written 23 months ago by ▴ 90
0
votes
1
reply
3.2k
views
DESeq2 in R 4.2.2
DESeq2 SummarizedExperiment DelayedArray
updated 2.3 years ago by ★ 4.8k • written 2.3 years ago by • 0
4
votes
3
replies
2.5k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array SingleCellExperiment DelayedArray
2.6 years ago merv ▴ 150
5
votes
1
reply
3.7k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array SingleCellExperiment DelayedArray
2.7 years ago merv ▴ 150
0
votes
0
replies
1.6k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array SingleCellExperiment DelayedArray
2.7 years ago merv ▴ 150
4
votes
13
replies
2.7k
views
Speeding up of DelayedArray::write_block()
HDF5Array DelayedArray
updated 19 months ago by 16k • written 3.6 years ago by ▴ 10
4
votes
3
replies
1.4k
views
Temporal directory setting for DelayedArray
HDF5Array DelayedArray
3.8 years ago Koki ▴ 10
2
votes
3
replies
1.5k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64 HDF5Array DelayedArray
updated 3.8 years ago by 16k • written 3.9 years ago by ▴ 10
3
votes
5
replies
1.8k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array DelayedArray
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 40
0
votes
1
reply
976
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
3.9 years ago Koki ▴ 10
0
votes
1
reply
1.1k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
3.9 years ago Koki ▴ 10
9
votes
8
replies
2.0k
views
Processing time of blockApply and DelayedArray
DelayedArray HDF5Array
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 40
2
votes
4
replies
1.5k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array DelayedArray
4.0 years ago • updated 3.9 years ago Koki ▴ 10
1
vote
2
replies
1.4k
views
Error: C stack usage of HDF5Array
DelayedArray HDF5Array
4.0 years ago Koki ▴ 10
2
votes
6
replies
1.9k
views
"dim<-" against on-disk arrays
DelayedArray TileDBArray HDF5Array
updated 3.9 years ago by 16k • written 4.0 years ago by ▴ 10
1
vote
1
reply
2.6k
views
Problem installing DelayedArray
DelayedArray
updated 4.2 years ago by 16k • written 4.2 years ago by ★ 8.2k
11
votes
5
replies
1.6k
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 600
2
votes
8
replies
3.4k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray warning installation
updated 4.9 years ago by 16k • written 4.9 years ago by ▴ 10
1
vote
3
replies
2.0k
views
Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 170
2
votes
1
reply
1.5k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater BiocSingular DelayedArray
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 350
4
votes
3
replies
1.4k
views
Best way of creating a large RleMatrix
DelayedArray RleMatrix
updated 6.3 years ago by 16k • written 6.5 years ago by ▴ 180
8
votes
8
replies
2.2k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats
updated 6.5 years ago by ▴ 750 • written 6.5 years ago by ▴ 180
0
votes
1
reply
1.4k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 6.7 years ago by 25k • written 6.8 years ago by • 0
0
votes
1
reply
2.2k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
6.8 years ago cristoforo-grasso • 0
2
votes
2
replies
1.5k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 7.1 years ago by ▴ 750 • written 7.1 years ago by ★ 1.3k
7
votes
4
replies
2.0k
views
From RleList to RleArray
delayedarray rlelist rle
updated 7.5 years ago by ▴ 750 • written 7.5 years ago by ▴ 980
2
votes
6
replies
1.9k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 7.6 years ago by 16k • written 7.6 years ago by ▴ 180
4
votes
4
replies
1.8k
views
remove NA's from a DelayedArray
delayedarray
updated 7.6 years ago by 16k • written 7.6 years ago by ▴ 180
0
votes
1
reply
1.6k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package dmrfinder delayedarray combine
7.8 years ago br • 0
1
vote
6
replies
2.1k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 7.8 years ago by ▴ 750 • written 7.8 years ago by ★ 1.9k
3
votes
8
replies
3.7k
views
Tutorial: "developing" with HDF5Array
hdf5 DelayedArray summarizedexperiment Tutorial
8.2 years ago Vincent J. Carey, Jr. 6.7k
37 results • Page 1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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