Bioconductor DTU

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1.4k

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DTU DEXSeq RNADTU

updated 3.0 years ago by Alejandro Reyes ★ 1.9k • written 3.4 years ago by Nirad ▴ 10

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1.5k

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DESeq2 DRIMSeq dtu RNASeq

3.5 years ago sbcn ▴ 80

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1.9k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 3.6 years ago by k.vitting.seerup ▴ 120 • written 3.8 years ago by jbono ▴ 10

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1.4k

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DRIMSeq R DTU technical replicates deseq2

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by poecile.pal • 0

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2.4k

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RATs RNA-Seq Isoforms DTU expression

updated 5.6 years ago by fruce_ki ▴ 20 • written 5.6 years ago by UserAnonyme • 0

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.8 years ago by Michael Love 43k • written 6.0 years ago by fiona.dick91 ▴ 60

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3.8k

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tximport dtu salmon TPM rnaseqDTU

written 5.8 years ago by fiona.dick91 ▴ 60

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2.7k

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rnaseqDTU dtu

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by rbenel ▴ 40

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1.4k

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DTU DRIMSeq rnaseqDTU

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by fiona.dick91 ▴ 60

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.5 years ago by Koen Van den Berge ▴ 180 • written 6.5 years ago by fiona.dick91 ▴ 60

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1.4k

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drimseq DTU

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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