Bioconductor DSS

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130

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DSS

updated 4 days ago by James W. MacDonald 68k • written 5 days ago by Michael • 0

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537

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dss DSS

updated 13 months ago by James W. MacDonald 68k • written 13 months ago by chuanjiao6 • 0

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871

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DSS

23 months ago Weisheng • 0

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1.2k

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DSS DMRcaller

updated 21 months ago by Noelia • 0 • written 2.6 years ago by Claire • 0

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3.4k

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methylationArrayAnalysis ChAMP DMP DSS

updated 2.4 years ago by James W. MacDonald 68k • written 2.8 years ago by 16301050225 • 0

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1.6k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3.1 years ago Jojo • 0

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898

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DSS

3.5 years ago cer.chloe ▴ 30

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1.3k

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DSS

4.3 years ago vi.hammer • 0

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981

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DSS BSSeq

4.9 years ago stephanie.rialle • 0

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1.1k

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DSS bug troubleshooting callDMR

5.2 years ago matthew.kearney • 0

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987

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DSS DSS-single bsseq

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by varunorama • 0

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951

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DSS methylation

5.5 years ago CalM • 0

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1.8k

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dmrseq sva DSS

updated 5.7 years ago by keegan ▴ 60 • written 5.7 years ago by gjl ▴ 10

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1.4k

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DSS dmltest bayesian statistics methylation

6.9 years ago floriandeckert ▴ 30

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1.1k

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DSS DMLtest

7.0 years ago floriandeckert ▴ 30

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1.7k

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DSS WGBS coverage

updated 9 months ago by j.gilbert • 0 • written 7.4 years ago by floriandeckert ▴ 30

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1.3k

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DSS

8.6 years ago aerval • 0

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2.3k

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dss

8.9 years ago kafkaskid ▴ 20

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2.4k

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DSS bsseq summarizedexperiment

9.5 years ago Tim Peters ▴ 230

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1.6k

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limma DSS limma DSS

updated 11.0 years ago by James W. MacDonald 68k • written 11.0 years ago by Sabet, Julia A ▴ 180

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1.9k

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RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS

updated 12.0 years ago by Ryan C. Thompson ★ 7.9k • written 12.0 years ago by Richard Friedman ★ 2.0k

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1.9k

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DSS DSS

updated 14.0 years ago by Ina Hoeschele ▴ 620 • written 14.0 years ago by Prasad Siddavatam ▴ 150

22 results • Page 1 of 1

Recent ...

Replies

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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