Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DRIMSeq
•
reset
1
vote
1
reply
681
views
DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq
DRIMSeq
DEXSeqDataSet
columnduplication
15 months ago
NiKo
▴ 10
0
votes
0
replies
578
views
Estimating factors of unwanted variation for DTU analysis
RUVSeq
DRIMSeq
22 months ago
Luca
• 0
0
votes
3
replies
972
views
DRIMseq error for paired sample analysis
DRIMSeq
22 months ago
Luca
• 0
2
votes
2
replies
940
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
2.6 years ago
wangziwei0010
▴ 10
0
votes
4
replies
2.0k
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq
DRIMSeq
updated 2.7 years ago by
jeroen.gilis
▴ 90 • written 2.7 years ago by
phoebe1354
• 0
0
votes
5
replies
1.6k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
3.5 years ago
bioinformatic_trainee
▴ 10
3
votes
4
replies
1.5k
views
DRIMSeq: many NAs in results compared to DESeq2 ?
DESeq2
DRIMSeq
dtu
RNASeq
3.5 years ago
sbcn
▴ 80
0
votes
0
replies
1.1k
views
Error generating counts df for use with DRIMSeq/DEXseq
DRIMSeq
DEXSeq
3.8 years ago
jbono
▴ 10
0
votes
2
replies
1.3k
views
DRIMSeq + dmFilter
DEXSeq
DRIMSeq
3.9 years ago
Gaia
• 0
0
votes
5
replies
1.8k
views
Error using DRIMSeq with Salmon count data
DRIMSeq
tximport
txdb
Salmon
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
Charlotte
• 0
1
vote
1
reply
1.0k
views
Error in dmTest() from DRIMSeq package - tuQTL
DRIMSeq
tuQTL
updated 4.5 years ago by
Gosia Nowicka
▴ 90 • written 4.6 years ago by
iaradsouza1
• 0
0
votes
5
replies
1.4k
views
DRIMSeq with technical replicates
DRIMSeq
R
DTU
technical replicates
deseq2
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
poecile.pal
• 0
1
vote
1
reply
1.0k
views
DEXSeq-DTU normalisation suggestion - scaledTPM vs dtuScaledTPM
tximport
DEXSeq-DTU
DRIMSeq
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
aleksandar.baburski.g
• 0
0
votes
0
replies
852
views
Subset samples expressing genes for DEXSeq or DRIMSeq analysis
DEXSeq
DRIMSeq
4.7 years ago
alexis.weinreb
• 0
0
votes
11
replies
1.9k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.8 years ago
saddamhusain77
• 0
0
votes
1
reply
1.0k
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 5.9 years ago by
Koen Van den Berge
▴ 180 • written 5.9 years ago by
sdvie
• 0
1
vote
2
replies
1.8k
views
Normalized transcript/exon counts for network analysis
drimseq
dexseq
wgcna
sva
updated 5.9 years ago by
Gosia Nowicka
▴ 90 • written 5.9 years ago by
maya.kappil
▴ 30
0
votes
4
replies
1.8k
views
DRIMSeq continious variable in design matrix - Error during precision estimation
DRIMSeq
dmPrecision
updated 23 months ago by
Mary-Ellen
• 0 • written 6.0 years ago by
fiona.dick91
▴ 60
2
votes
4
replies
1.9k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
6.0 years ago
d-joester
▴ 20
2
votes
2
replies
1.4k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
1.3k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
Jack.Hearn
• 0
1
vote
1
reply
949
views
Calling a package specific function in a for loop
drimseq
swimming downstream
for loop
sapply
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
georgewwp
• 0
4
votes
3
replies
1.7k
views
DEXSeq and DRIMSeq on paired samples?
DRIMSeq
DEXSeq
updated 6.4 years ago by
Gosia Nowicka
▴ 90 • written 6.4 years ago by
zoe.ward
• 0
2
votes
9
replies
2.1k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 6.5 years ago by
Koen Van den Berge
▴ 180 • written 6.5 years ago by
fiona.dick91
▴ 60
1
vote
1
reply
1.4k
views
DrimSeq: installation versions
drimseq
DTU
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
somseeprags
▴ 10
1
vote
2
replies
1.8k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 8.0 years ago by
Gosia Nowicka
▴ 90 • written 8.0 years ago by
kristoffer.vittingseerup
▴ 20
26 results • Page
1 of 1
Recent ...
Replies
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
Thanks James!
Votes
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
Awards
• All
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Locations
• All
France,
13 minutes ago
United States,
38 minutes ago
United States,
50 minutes ago
United States,
57 minutes ago
Ghent University, Belgium,
59 minutes ago
Traffic: 727 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6