Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DNAstringset
•
reset
2
votes
1
reply
1.0k
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
6.4 years ago
s.ghignone
▴ 10
3
votes
4
replies
4.2k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
vinod.acear
▴ 50
2
votes
5
replies
5.2k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Sophie
• 0
0
votes
2
replies
1.1k
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
8.1 years ago
XIA.PAN
▴ 20
6
votes
6
replies
6.8k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 8.1 years ago by
Hervé Pagès
16k • written 8.1 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
6.0k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.2k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.0 years ago by
Robert Stojnic
▴ 50 • written 9.0 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.7k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.3 years ago
ben.ward
▴ 30
0
votes
3
replies
1.4k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
vinod.acear
▴ 50
15
votes
2
replies
19k
views
Extract sequence from DNAStringSet object
dnastringset
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
komal.rathi
▴ 120
3
votes
8
replies
2.1k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
9.4 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.9k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
10.0 years ago
dan.gatti
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
Gordon Smyth
52k
I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly?
by
James W. MacDonald
68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
Votes
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
pcantalupo
▴ 10
Popular Question
to
bioinformaticssrm2011
• 0
Popular Question
to
slizchap
• 0
Scholar
to
Aaron Lun
★ 28k
Locations
• All
The city by the bay,
31 minutes ago
Australia,
39 minutes ago
Norway,
1 hour ago
United States,
1 hour ago
United States,
2 hours ago
Traffic: 742 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6