Bioconductor DNAstringset

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933

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dnastringset dnastringsetlist seqnames

6.0 years ago s.ghignone ▴ 10

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4.0k

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dnastringset list stringset

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by vinod.acear ▴ 50

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4.9k

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subseq Xvector dnastringset

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Sophie • 0

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993

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dnastringset aastringset

7.7 years ago XIA.PAN ▴ 20

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6.0k

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DNAstringset

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by XIA.PAN ▴ 20

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dnastringset getseq

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by TimothéeFlutre ▴ 80

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pwmenrich dnastringset

updated 8.6 years ago by Robert Stojnic ▴ 50 • written 8.6 years ago by sekawaiwai2006 ▴ 20

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dnastringset parallel iterators

8.9 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by vinod.acear ▴ 50

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dnastringset

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by komal.rathi ▴ 120

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vcf testthat dnastringset

9.0 years ago TimothéeFlutre ▴ 80

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4.6k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.6 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Votes

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

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