Bioconductor DNAStringSetList

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dnastringset dnastringsetlist seqnames

6.2 years ago s.ghignone ▴ 10

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biostrings DNAStringSetList

8.8 years ago Michael Love 43k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.8 years ago dan.gatti • 0

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variantannotation granges DNAStringSetList findoverlaps Vranges

9.9 years ago summerela • 0

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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