Bioconductor DNAStringSet

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973

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dnastringset dnastringsetlist seqnames

6.2 years ago s.ghignone ▴ 10

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4.1k

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dnastringset list stringset

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by vinod.acear ▴ 50

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5.0k

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subseq Xvector dnastringset

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by Sophie • 0

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1.0k

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dnastringset aastringset

7.9 years ago XIA.PAN ▴ 20

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6.4k

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DNAstringset

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by XIA.PAN ▴ 20

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5.8k

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dnastringset getseq

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by TimothéeFlutre ▴ 80

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2.1k

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pwmenrich dnastringset

updated 8.8 years ago by Robert Stojnic ▴ 50 • written 8.8 years ago by sekawaiwai2006 ▴ 20

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1.6k

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dnastringset parallel iterators

9.1 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by vinod.acear ▴ 50

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19k

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dnastringset

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by komal.rathi ▴ 120

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2.0k

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vcf testthat dnastringset

9.2 years ago TimothéeFlutre ▴ 80

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4.7k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.8 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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