Bioconductor DNAStringSet

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955

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dnastringset dnastringsetlist seqnames

6.1 years ago s.ghignone ▴ 10

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4.1k

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dnastringset list stringset

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by vinod.acear ▴ 50

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5.0k

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subseq Xvector dnastringset

updated 7.6 years ago by Hervé Pagès 16k • written 7.6 years ago by Sophie • 0

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1.0k

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dnastringset aastringset

7.8 years ago XIA.PAN ▴ 20

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6.3k

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DNAstringset

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by XIA.PAN ▴ 20

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5.8k

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dnastringset getseq

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by TimothéeFlutre ▴ 80

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2.0k

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pwmenrich dnastringset

updated 8.8 years ago by Robert Stojnic ▴ 50 • written 8.8 years ago by sekawaiwai2006 ▴ 20

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1.6k

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dnastringset parallel iterators

9.0 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by vinod.acear ▴ 50

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19k

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dnastringset

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by komal.rathi ▴ 120

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2.0k

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vcf testthat dnastringset

9.1 years ago TimothéeFlutre ▴ 80

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4.7k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.7 years ago dan.gatti • 0

12 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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