Bioconductor DNAStringSet

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987

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dnastringset dnastringsetlist seqnames

6.3 years ago s.ghignone ▴ 10

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4.1k

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dnastringset list stringset

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by vinod.acear ▴ 50

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5.1k

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subseq Xvector dnastringset

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by Sophie • 0

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1.1k

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dnastringset aastringset

8.0 years ago XIA.PAN ▴ 20

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6.5k

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DNAstringset

updated 8.0 years ago by Hervé Pagès 16k • written 8.0 years ago by XIA.PAN ▴ 20

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5.9k

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dnastringset getseq

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by TimothéeFlutre ▴ 80

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2.1k

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pwmenrich dnastringset

updated 8.9 years ago by Robert Stojnic ▴ 50 • written 8.9 years ago by sekawaiwai2006 ▴ 20

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1.6k

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dnastringset parallel iterators

9.2 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by vinod.acear ▴ 50

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19k

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dnastringset

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by komal.rathi ▴ 120

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2.1k

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vcf testthat dnastringset

9.3 years ago TimothéeFlutre ▴ 80

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4.8k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.9 years ago • updated 9.8 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Votes

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: Plot title for PCA in DESeq2

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