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DNAStringSet
•
reset
2
votes
1
reply
828
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.7 years ago
s.ghignone
▴ 10
3
votes
4
replies
3.8k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
vinod.acear
▴ 50
2
votes
5
replies
4.5k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
Sophie
• 0
0
votes
2
replies
864
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.3 years ago
XIA.PAN
▴ 20
6
votes
6
replies
5.4k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
5.4k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.3 years ago by
Robert Stojnic
▴ 50 • written 8.3 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.6 years ago
ben.ward
▴ 30
0
votes
3
replies
1.2k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
vinod.acear
▴ 50
15
votes
2
replies
18k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
komal.rathi
▴ 120
3
votes
8
replies
1.8k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.7 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.4k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
9.2 years ago
dan.gatti
• 0
12 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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