Bioconductor DEs

Showing : DEs • reset

votes

285

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DESeq2 des

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by Atul K. • 0

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replies

996

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by Alexandre • 0

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307

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Des DESeq2

updated 8 months ago by hemantcnaik • 0 • written 8 months ago by Sahar • 0

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495

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DESeq2 DEs

9 months ago feather-W • 0

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676

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DESeq2 des

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by Devin • 0

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748

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DES DESIGN

updated 2.2 years ago by Michael Love 43k • written 2.3 years ago by mike • 0

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842

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DESeq2 DES

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by heikki.sarin ▴ 10

7 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Votes

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

Awards • All

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k