Showing : DESeqDataSet • reset
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Error when creating a DESeqDataSet object
deseq2 DESeqDataSet
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
1
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3
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3.0k
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deseq2 DESeqDataSet size when saved
deseq2 infrastructure deseqdataset importing
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
0
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2
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1.1k
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constructing a DESeqDataSet
deseq2 DESeqDataSet
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 20
1
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2
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1.5k
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DESeq2: different number of significant genes between DESeqDataSetFromMatrix and DESeqDataSetFromHTSeqCount
deseq2 deseqdatasetfrommatrix deseqdataset
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
3
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7
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4.1k
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Transcript level differential expression analysis
deseq2 deseqdataset transcripts
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
2
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1
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4.4k
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DESeq2 error when creating the DESeqDataSet
deseq2 bioconductor deseqdataset r summarizedexperiment
8.1 years ago sebastian.lobentanzer ▴ 50
3
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4
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9.0k
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DESeqDataSetFromMatrix giving error: "argument must be coercible to non-negative integer"
DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2
8.4 years ago ErickF ▴ 40
2
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10
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5.0k
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DESeqDataSet 2 factors with a covariate
covariate deseqdataset Deseq2 multiple factor design
updated 9.3 years ago by 43k • written 9.3 years ago by ▴ 10
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4
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4.6k
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Running DESeqDataSet with 4 factors?
summarizedexperiment deseq2 deseqdataset multiple factor design differential gene expression
9.3 years ago Lillyhchen ▴ 10
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
0
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2
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5.8k
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Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.6 years ago greg.mulhearn • 0
5
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8
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3.6k
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Large disk images of DESeqDataSet / SummarizedExperiment objects when using the save function
SummarizedExperiment DESeqDataSet GenomicRanges DESeq2 save
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 30
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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