Bioconductor DESeqDataSet

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deseq2 DESeqDataSet

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by colaneri ▴ 30

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deseq2 infrastructure deseqdataset importing

updated 6.1 years ago by Michael Love 42k • written 6.1 years ago by eric.blanc • 0

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deseq2 DESeqDataSet

updated 6.4 years ago by Michael Love 42k • written 6.5 years ago by linouhao ▴ 20

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deseq2 deseqdatasetfrommatrix deseqdataset

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by jillian.waters • 0

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deseq2 deseqdataset transcripts

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by tarun2 • 0

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deseq2 bioconductor deseqdataset r summarizedexperiment

8.0 years ago sebastian.lobentanzer ▴ 50

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DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2

8.4 years ago ErickF ▴ 40

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covariate deseqdataset Deseq2 multiple factor design

updated 9.3 years ago by Michael Love 42k • written 9.3 years ago by Lillyhchen ▴ 10

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summarizedexperiment deseq2 deseqdataset multiple factor design differential gene expression

9.3 years ago Lillyhchen ▴ 10

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deseq2 deseqdataset rnaseqgene fastq reference genome

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by greg.mulhearn • 0

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plot heatmap graphical rnaseqgene deseqdataset

9.6 years ago greg.mulhearn • 0

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SummarizedExperiment DESeqDataSet GenomicRanges DESeq2 save

updated 9.7 years ago by Wolfgang Huber ★ 13k • written 9.7 years ago by akaever ▴ 30

12 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by nramakr • 0

Thank you. Could you clarify what that says about the validity of the whole dataset? Would it still be alright to assess candidates above t…

Answer: Volcano plot has many values around zero by ATpoint ★ 4.5k

It means you have little (no) evidence for any differential expression.

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k