Showing : DESe • reset
2
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2
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq DESeq2 dese
3 months ago BioinfGuru ▴ 70
0
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1
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338
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collapseReplicates dimension error
DESeq2 Dese
updated 8 months ago by 43k • written 8 months ago by • 0
0
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3
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493
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DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
written 9 months ago by • 0
0
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2
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516
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
10 months ago • updated 9 months ago pl23 • 0
0
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2
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762
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Linear Model Fitting and Colinearity
dese DESeq2
11 months ago Hugo • 0
0
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5
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1.1k
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DESeq2 analysis
DESe DESeq2
16 months ago Adèle • 0
0
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2
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1.5k
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Handling NA's in Deseq2
Dese DESeq2
18 months ago • updated 17 months ago Asger Mølgaard • 0
2
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17
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2.4k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 18 months ago by 43k • written 18 months ago by • 0
4
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5
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1.6k
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 5 months ago by • 0 • written 19 months ago by ▴ 10
3
votes
3
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1.1k
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Merging two plated in R
dese DESeq2
updated 2.5 years ago by 67k • written 2.5 years ago by ▴ 10
0
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5
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3.9k
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
1
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3
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1.7k
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.8 years ago aedavids ▴ 20
0
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2
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1.0k
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DESeq2 ratio of ratios and p-value
DESeq2 dese
3.1 years ago wilfried.guiblet • 0
0
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2
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766
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
2
votes
3
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1.2k
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Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.7 years ago by 43k • written 3.7 years ago by • 0
0
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2
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985
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Effect of within-group variation on gene expression analysis
DESeq2
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
16 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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