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DESe
•
reset
2
votes
2
replies
614
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
8 months ago
BioinfGuru
▴ 70
0
votes
1
reply
431
views
collapseReplicates dimension error
DESeq2
Dese
updated 12 months ago by
Michael Love
43k • written 12 months ago by
Léa
• 0
0
votes
3
replies
605
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 14 months ago by
Xu
• 0
0
votes
2
replies
618
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
14 months ago
pl23
• 0
0
votes
2
replies
927
views
Linear Model Fitting and Colinearity
dese
DESeq2
16 months ago
Hugo
• 0
0
votes
5
replies
1.2k
views
DESeq2 analysis
DESe
DESeq2
20 months ago
Adèle
• 0
0
votes
2
replies
2.0k
views
Handling NA's in Deseq2
Dese
DESeq2
22 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.8k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 23 months ago by
Michael Love
43k • written 23 months ago by
Alina
• 0
4
votes
5
replies
1.9k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 10 months ago by
ij283
• 0 • written 2.0 years ago by
Bernardo
▴ 10
3
votes
3
replies
1.2k
views
Merging two plated in R
dese
DESeq2
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.2k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.8k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.2 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.4 years ago
wilfried.guiblet
• 0
0
votes
2
replies
831
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
Dinesh
• 0
2
votes
3
replies
1.3k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
hpapoli
• 0
16 results • Page
1 of 1
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★ 4.8k
If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…
Answer: BiocParallel_1.40.1.tar.gz not available
by
shepherl
4.1k
Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …
Votes
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Limma outputs different results for same sample?
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