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Deseq2: How to adjust for baseline read counts when testing for groups differences at post-treatment
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Recent ...
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
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0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
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"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons
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bd2000
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Follow up question, is this the correct way to extract results?
```r
results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
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ktz
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0
Thank you for your reply! I would love to know your thoughts on the plots I've included above.
> 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
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ktz
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I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
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