Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DESE
•
reset
2
votes
2
replies
540
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
5 months ago
BioinfGuru
▴ 70
0
votes
1
reply
381
views
collapseReplicates dimension error
DESeq2
Dese
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Léa
• 0
0
votes
3
replies
546
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 11 months ago by
Xu
• 0
0
votes
2
replies
561
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
12 months ago
pl23
• 0
0
votes
2
replies
853
views
Linear Model Fitting and Colinearity
dese
DESeq2
13 months ago
Hugo
• 0
0
votes
5
replies
1.1k
views
DESeq2 analysis
DESe
DESeq2
18 months ago
Adèle
• 0
0
votes
2
replies
1.7k
views
Handling NA's in Deseq2
Dese
DESeq2
20 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Alina
• 0
4
votes
5
replies
1.8k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 7 months ago by
ij283
• 0 • written 22 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.1k
views
Merging two plated in R
dese
DESeq2
updated 2.7 years ago by
James W. MacDonald
67k • written 2.7 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.7 years ago by
Basti
▴ 780 • written 2.7 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.0 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
791
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
glennli
• 0
0
votes
2
replies
1.0k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
hpapoli
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: Find exact GRanges match keeping metadata columns
by
Michael Love
43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
Awards
• All
Teacher
to
Axel Klenk
★ 1.1k
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Locations
• All
South Korea,
1 hour ago
Italy,
2 hours ago
Pakistan,
2 hours ago
UPF, Barcelona, Spain,
2 hours ago
United States,
4 hours ago
Traffic: 561 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6