Showing : DES • reset
0
votes
1
reply
287
views
unreal negative log2fc values
DESeq2 des
updated 5 months ago by 67k • written 5 months ago by • 0
2
votes
9
replies
1000
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 7 months ago by 67k • written 8 months ago by • 0
0
votes
1
reply
309
views
Bioinformatics student
Des DESeq2
updated 8 months ago by • 0 • written 8 months ago by • 0
2
votes
2
replies
496
views
With DESeq2 "Not full rank" Error with design
DESeq2 DEs
9 months ago feather-W • 0
0
votes
1
reply
680
views
Design structure
DESeq2 des
updated 2.1 years ago by 43k • written 2.1 years ago by • 0
0
votes
1
reply
749
views
Design Matrix Singularity Error
DES DESIGN
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
0
votes
1
reply
847
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 10
7 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
United States, 11 minutes ago
France, 42 minutes ago
United Kingdom, 1 hour ago
WEHI, Melbourne, Australia, 4 hours ago
30 N Gould St STE 39034 Sheridan, WY, 4 hours ago
Traffic: 480 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6