Bioconductor DES

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335

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DESeq2 des

updated 7 months ago by James W. MacDonald 68k • written 7 months ago by Atul K. • 0

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1.2k

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by Alexandre • 0

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352

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Des DESeq2

updated 10 months ago by hemantcnaik • 0 • written 10 months ago by Sahar • 0

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563

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DESeq2 DEs

11 months ago feather-W • 0

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712

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DESeq2 des

updated 2.3 years ago by Michael Love 43k • written 2.3 years ago by Devin • 0

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794

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DES DESIGN

updated 2.4 years ago by Michael Love 43k • written 2.5 years ago by mike • 0

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917

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DESeq2 DES

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by heikki.sarin ▴ 10

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Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This post does not fit the theme of this forum.

Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0

Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…

Comment: Gene Set Enrichment Analysis in Bioconductor course by info ▴ 10

If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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