Showing : DES • reset
0
votes
1
reply
313
views
unreal negative log2fc values
DESeq2 des
updated 6 months ago by 67k • written 6 months ago by • 0
2
votes
9
replies
1.1k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 9 months ago by 67k • written 9 months ago by • 0
0
votes
1
reply
330
views
Bioinformatics student
Des DESeq2
updated 9 months ago by • 0 • written 9 months ago by • 0
2
votes
2
replies
534
views
With DESeq2 "Not full rank" Error with design
DESeq2 DEs
10 months ago feather-W • 0
0
votes
1
reply
689
views
Design structure
DESeq2 des
updated 2.2 years ago by 43k • written 2.2 years ago by • 0
0
votes
1
reply
767
views
Design Matrix Singularity Error
DES DESIGN
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
0
votes
1
reply
884
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 10
7 results • Page 1 of 1
Recent ...
Replies
Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
Awards • All
Popular Question to shepherl 4.1k
Popular Question to simon.andrews • 0
Popular Question to Gordon Smyth 52k
Popular Question to ajglajd gajgflkadfj gl • 0
Popular Question to Robert Castelo ★ 3.4k
Locations • All
United States, 1 hour ago
Canada, 1 hour ago
San Diego, 2 hours ago
United States, 2 hours ago
EMBL Heidelberg, 2 hours ago
Traffic: 610 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6