Bioconductor DEGraph

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RNASeqData DEGraph RNASeq edgeR DegNorm

written 9 months ago by Shaozhen • 0

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rnaseqGene edgeR DEGraph DifferentialExpression

updated 13 months ago by Gordon Smyth 52k • written 13 months ago by z_bahari • 0

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GO DEGraph GO DEGraph

14.1 years ago Dick Beyer ★ 1.4k

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Pathways Network SPIA DEGraph Pathways Network SPIA DEGraph

updated 14.1 years ago by January Weiner ▴ 370 • written 14.1 years ago by laurent jacob ▴ 100

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Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

What sort of object is `expression`? Does it contain any missing values?

Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0

Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…

Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0

Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…

Votes

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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