Bioconductor DE analysis

Showing : DE analysis • reset

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2.2k

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NanoStringDiff NanoString nCounter DE analysis

updated 13 months ago by georgersmith • 0 • written 5.4 years ago by lim6432 ▴ 50

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2.3k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by DcL-A • 0

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1.1k

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DE analysis miR deseq2 mirplant

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by weissert • 0

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1.7k

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rnaseq de analysis gene filtering noiseq

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by Mau ▴ 50

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2.7k

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edgeR DE analysis fold change cpm

updated 8.4 years ago by Ryan C. Thompson ★ 7.9k • written 8.4 years ago by Sara ▴ 20

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2.4k

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edgeR RNAseq DE analysis gene filtering

8.4 years ago Mau ▴ 50

6 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you James, that really helped! I tried CODE `enter code here` but I must have dome it incorrectly, as it showed all in red.

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Please come back to the support site and view your post - I've fixed it for you. If you want to show people your targets file, just paste t…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you Gordon! Apologies if this is a too basic question-I'm a biologist and want to ensure I understand correctly. Here is my metadata …

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

I offer my apologies if the title was misleading. I will change it at once. I wrote txdb because the error emnated from `seqlevelsStyle(txd…

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Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

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Popular Question to Jenny Drnevich ★ 2.0k

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Scholar to James W. MacDonald 67k