Bioconductor DDS

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386

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DESeqDataSetFromMatrix dds DESeq2

updated 9 months ago by James W. MacDonald 66k • written 9 months ago by naomi.croft • 0

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507

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 19 months ago by James W. MacDonald 66k • written 20 months ago by Enzo.Scifo • 0

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1.2k

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deseq2 cooks distance dds

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by ipso • 0

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1.1k

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deseq2 dds RPKM

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by harry.horsnell.17 • 0

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2.3k

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deseq2 rld pheatmap dds

updated 6.6 years ago by Michael Love 42k • written 8.8 years ago by rahel14350 ▴ 10

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5.1k

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deseq2 DDS

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by rrcutler ▴ 70

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4.9k

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Deseq2 dds confounders

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by colaneri ▴ 30

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Comment: limma comparison for small sample size and how to get covariance matrix by Gordon Smyth 51k

Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…

Answer: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.

Answer: XCMS2 of orbitrap data by Elodie • 0

Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…

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Answer: EPIC array hg38 annotation?

Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

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