Bioconductor DDS

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votes

518

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DESeqDataSetFromMatrix dds DESeq2

updated 16 months ago by James W. MacDonald 67k • written 16 months ago by naomi.croft • 0

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662

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Enzo.Scifo • 0

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1.4k

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deseq2 cooks distance dds

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by ipso • 0

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1.3k

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deseq2 dds RPKM

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by harry.horsnell.17 • 0

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2.4k

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deseq2 rld pheatmap dds

updated 7.2 years ago by Michael Love 43k • written 9.4 years ago by rahel14350 ▴ 10

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5.7k

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deseq2 DDS

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by rrcutler ▴ 70

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5.2k

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Deseq2 dds confounders

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by colaneri ▴ 30

7 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k