Bioconductor DAPAR

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MSnbase DAPAR DEP

4.0 years ago yueli7 ▴ 20

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Prostar Dapar clusterprofiler

updated 6.5 years ago by Samuel Wieczorek ▴ 10 • written 6.5 years ago by laural710 • 0

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install error package installation DAPAR prostar R version 3.4.4

6.6 years ago rita.reig • 0

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Prostar DAPAR software error

updated 7.0 years ago by Samuel Wieczorek ▴ 10 • written 7.1 years ago by van.theodorakis • 0

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Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

> Blockquote Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences[lope][1] Great information about the E…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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