Bioconductor Cuffdiff

Showing : Cuffdiff • reset

votes

490

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cummeRbund cufflink cuffdiff

updated 16 months ago by James W. MacDonald 67k • written 17 months ago by sumitra • 0

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3.5k

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RNA-seq / XLOC cuffdiff

updated 2.9 years ago by Lan • 0 • written 4.6 years ago by mg.mahabad1365 • 0

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1.7k

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WGCNA cuffdiff

6.3 years ago sbbinfo90 • 0

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1.4k

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cuffdiff sqlite

7.1 years ago handgabriel • 0

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1.4k

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kegg readcufflinks cuffdiff cuff

updated 7.1 years ago by thokall ▴ 160 • written 7.1 years ago by pierre.biojoux • 0

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3.7k

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htseqtools deseq2 counts cuffdiff

8.9 years ago Jon Bråte ▴ 260

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1.7k

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GAGE Cuffdiff gene names

updated 9.0 years ago by Luo Weijun ★ 1.6k • written 9.0 years ago by user31888 ▴ 30

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2.3k

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SpliceR Cuffdiff

updated 9.3 years ago by deppt002 • 0 • written 9.5 years ago by mfahim • 0

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1.5k

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deseq2 cuffdiff differential gene expression

9.5 years ago Assa Yeroslaviz ★ 1.5k

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3.7k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.6 years ago • updated 9.5 years ago elle ▴ 10

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1.8k

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deseq2 cuffdiff

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by a.de-giorgio12 • 0

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1.9k

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cummeRbund Script analysis RNAseq cuffdiff

updated 9.6 years ago by andrew.j.skelton73 ▴ 370 • written 9.6 years ago by mfahim • 0

12 results • Page 1 of 1

Recent ...

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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