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CpG
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reset
3
votes
2
replies
958
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE
CpG
minfi
CpGinterrogation
13 months ago
kyj2226
• 0
0
votes
0
replies
458
views
CpG coverage with MEDIPS
MEDIPS
CpG
16 months ago
greta
• 0
0
votes
4
replies
1.5k
views
CpG density in MEDIPS
CpG
MEDIPS
6.3 years ago
saripalligautam86
▴ 10
0
votes
3
replies
1.7k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
soli5
• 0
0
votes
1
reply
1.6k
views
CpG Sites // CG dinucleotides
CpG
CpG sites
CpG dinucleotides
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
ibetfer3
• 0
1
vote
1
reply
6.9k
views
How to get the all CpG sites genome postion for hg19
CpG
updated 7.8 years ago by
James W. MacDonald
67k • written 7.8 years ago by
ericotorrieri
• 0
0
votes
3
replies
2.5k
views
Compute the CpG content for all chromosome like the percentage of G+C
CpG
9.9 years ago
Tiphaine Martin
▴ 40
7 results • Page
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Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
Thanks James!
Votes
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
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