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DegNorm Convergence Statuses
Convergence DegNorm
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Answer: WGCNA by ATpoint ★ 4.8k
> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …
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Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…
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In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
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If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
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Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
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