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Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
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Dear Mike,
using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL?
`dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
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Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
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Tom
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[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
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ATpoint
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This was asked before: https://support.bioconductor.org/p/9148734/#9148812
Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
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... I did it.
It does filter out quite a bit of genes :
```
keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
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